Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O14
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical ...    53   2e-07

>AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical
           protein B0511.13 protein.
          Length = 473

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = -3

Query: 668 FRLKIDALSKEASEFLVSKIKPRAVFXXXXXXXXXXXXXYENLGQLE-FKEYSIPSFSWR 492
           +R + D LSKE+S  ++  + P+AVF             +   G  E F EY++ SFSWR
Sbjct: 234 YREQWDTLSKESSLQIIDSLNPKAVFGGHTHKMCKKK--WNKTGNSEYFYEYTVNSFSWR 291

Query: 491 NRPDPKYMLVTLTPNDYXVQKCGLPQEATIVITAI 387
           N   P  +LV +  ++  V  C LP E   ++  I
Sbjct: 292 NGDVPAMLLVVIDGDNVLVSSCRLPSEILQIMVYI 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,752,539
Number of Sequences: 27780
Number of extensions: 216650
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)