Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O12
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 45 1e-05
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 32 0.10
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 31 0.14
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.74
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 1.7
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.3
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 27 3.0
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 3.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.2
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 6.9
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 9.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 9.1
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 9.1
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 45.2 bits (102), Expect = 1e-05
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 13/188 (6%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLV--AVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK 598
G A K RTA +G + + D + E+NCE+DFVA+ FQ + A
Sbjct: 78 GGKLAEKSKNRTAKEGWIIQCISEDGRKAVMAEINCESDFVAQTTPFQDLARRIASTFLH 137
Query: 597 FA---HTKLQAKGPITKMELDSEQLGTLHAEGGKK-------LSEILALFIGSVGENAVL 448
+ H+ + + L + + + E +K L E + GE +
Sbjct: 138 YLPTNHSSYSVEATLKNEILKHQAYVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQV 197
Query: 447 RRAECWKANSEDVKIAGYTHPAPXXXXXXXSGKYGALLAYKQP-NDVEDIGRQLCQHIVG 271
+R C A I ++H A G+ G+++ + + + Q+ + IV
Sbjct: 198 QRLHCMNARVPSTAIGIFSHGAKQSSPLQQLGRIGSMVQINSDLSTRKGLSNQIAKEIVA 257
Query: 270 CAPTKIGD 247
P+ +
Sbjct: 258 QDPSSTSE 265
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 31.9 bits (69), Expect = 0.10
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = -1
Query: 258 KIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEII 124
K+GD + ++ + D++ C + ++ P Y I+E+L H VE+I
Sbjct: 279 KLGDIKINEEVQQKDEQECP--GDKVIPPEYAIQEVLWSHVVEVI 321
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = -1
Query: 312 VEDIGRQLCQHIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNV 133
++D+ ++C H A T +D+ TCL ++YL +Y ++ L+ N
Sbjct: 366 LQDVLNEVC-HETMLADTDAETSNNSIMIMCADERTCLQLRDYLSTVTYDNKDSLKNMNS 424
Query: 132 EIIDYVRF 109
+++DY ++
Sbjct: 425 KLVDYFQW 432
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = -2
Query: 404 SQVIPIQRLAVLVIIPLENMGPCSLTNSQTT*KTSAGNYASTSSAVHPQKSVTKKKTNQL 225
S+++P + + +++ LEN+ LT+S + GNY + Q K+N
Sbjct: 468 SKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHW 527
Query: 224 RTQMMKH 204
Q++ +
Sbjct: 528 EAQIVSY 534
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/96 (26%), Positives = 47/96 (48%)
Frame = +2
Query: 437 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 616
S+ LST+ P+ S++ S + S+ + S S SSS + + S + + I+
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 617 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATN 724
+SS + S +T S SS+ + F S L++++
Sbjct: 292 SSSSS--SSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 293 NYASTSSAVHPQKSVTKKKTNQLRTQMMKHVLFSRNTCS 177
N +S +S + +KS+ KK NQ TQ+ FS N S
Sbjct: 211 NLSSKASVLRNKKSILLKKRNQDETQLTTEEDFSANNDS 249
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 300 GRQLCQH-IVGCAPTKIG--DKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVE 130
GR+L + +G A ++ D++ D L+FQ+ + EEIL+K N+E
Sbjct: 583 GRKLLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDLKENQCLIFEEILEKTNIE 642
Query: 129 IIDYVR 112
+ D R
Sbjct: 643 VGDLKR 648
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 662 SVSQLSSTRAPW-FLSNLTATNPWRAVLPANLXAFAH 769
S +L+ST W F++N+ + PW LP+ + H
Sbjct: 3948 SYLKLASTEPLWLFINNIHLSTPWAEKLPSKMSNHLH 3984
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.0
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = -2
Query: 329 TNSQTT*KTSAGNYASTSSAVHPQKSVTKKKTNQLRTQMMKHVLFSRNTCSIHPIRLRKS 150
T S+ K ++ +TSS TK KTNQL + + + S R S
Sbjct: 340 TKSEELKKINSIKVDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPHRTTSSRNS 399
Query: 149 YRNTMLKSLIM--LDSLA-EKYLNL 84
N K L M +D L+ E+Y NL
Sbjct: 400 LPNNTTKELEMKKMDDLSHERYENL 424
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 130 FNIVFL*DFLNRIGWIEQVFLENKTCFII*VLSWFVFFFVTDFCGC 267
F +V DF+ R+ W+ +V E+++ F F+ F+ F C
Sbjct: 296 FAVVSAIDFVLRMAWVVRVLPEHQSAFFTTDFGIFIMQFLEVFRRC 341
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 5.2
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +2
Query: 410 TSSLFAFQHSARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV 589
+SS +A S S + S N + + P S+ S + SSS+ + SL
Sbjct: 71 SSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLA 130
Query: 590 *ANL-NEAIAASSIIF*NLSFLATKSVSQLSST 685
+++ + ++A+SSI +L+ +T S S SS+
Sbjct: 131 SSSITSSSLASSSITSSSLASSSTTSSSLASSS 163
Score = 25.4 bits (53), Expect = 9.1
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Frame = +2
Query: 407 LTSSLFAFQHSARLSTAFSPT-EPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACS 583
LTSS S +T+ SPT + S++ + + S + S SL+SS LA S
Sbjct: 85 LTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASS--STTSSSLASSSITSSSLASS 142
Query: 584 LV*ANLNEAIAASSIIF*NLSFLATKSVSQLSSTRAPW--FLSNLTATN 724
+ + ++A+SS +L+ +T S + + T + LS+ A+N
Sbjct: 143 SI---TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASN 188
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -2
Query: 323 SQTT*KTSAGNYASTSSAVHPQKSVTKKKTNQLRTQMMKHVLFSRNTCS 177
SQ T +++S + A+ P +T + +M+K V+F R C+
Sbjct: 567 SQLLQATPGRSFSSNAEALLPLNYITLLSKDSSSPKMLKDVIFERLQCA 615
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 239 KTNQLRTQMMKHVLFSRNTCSIHPIRLRKSYRNTMLKSLIML-DSLAEK 96
KT LR + I PI L +SY N++LKSL L D L +K
Sbjct: 289 KTFPLRNKTTSDDYLFLPETDIPPIILSRSYVNSVLKSLPALPDELFQK 337
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 350 NMGPCSLTNSQTT*KTSAGNYASTSSAV 267
N+G CSL T S +YA TSS++
Sbjct: 427 NIGRCSLKKLSTIRSCSTNSYAFTSSSL 454
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.1
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = -2
Query: 386 QRLAVLVIIPLENMGPC--SLTNSQTT*KTS--AGNYASTSSAVHP--QKSVTKKKTNQL 225
+R+ LV+IP EN+GP ++ N +T T G + + + P Q S+ + +
Sbjct: 96 ERIRSLVVIPSENLGPLHEAIVNLHSTYMTLYWLGEFFGIQAKLFPLFQGSINENEKLSR 155
Query: 224 RTQMMKHVLFSRNTCSIHPIRLRKSYRNTMLK 129
Q + S S P+ R+S + +LK
Sbjct: 156 YYQASLLLQESDQLLSRFPLMKRQSSVSLLLK 187
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 702 KNHGALVELNCETDFVAKNDKFQKMIEDAA 613
K +G +V++N DF+ K + I+DAA
Sbjct: 258 KTNGGVVQVNFYQDFIRKPGSDRATIDDAA 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,082
Number of Sequences: 5004
Number of extensions: 75160
Number of successful extensions: 243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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