Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O12
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0591 - 19051748-19051807,19053044-19053133,19053238-190533... 62 6e-10
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 50 2e-06
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 29 4.1
01_06_0055 + 26030562-26032571 29 4.1
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691... 29 5.4
08_01_0838 - 8185083-8185910 28 7.2
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233... 28 7.2
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 28 9.5
03_05_1064 - 30058253-30058467,30058549-30058762,30058846-300589... 28 9.5
>08_02_0591 -
19051748-19051807,19053044-19053133,19053238-19053363,
19053920-19054104,19054644-19054818,19057111-19057191,
19057242-19057265,19057581-19057753,19057847-19058123,
19059093-19059149,19059604-19059699
Length = 447
Score = 61.7 bits (143), Expect = 6e-10
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK-- 598
G A K + RTA +GL+A+ D+ A+VELNCETDFVA+ND FQ ++ + FK
Sbjct: 154 GVVLAAKKSSRTAAEGLLAIAQDEKRAAVVELNCETDFVARNDVFQYLL--VLVRGFKAS 211
Query: 597 -FAHTKLQAKG------PITKMELDSEQLGTLHAE--GGKKLSEILALFIGSVGENAVLR 445
A L A+ P L++ + H + G + + VGEN R
Sbjct: 212 SLAKLALSARDPGELVFPFGPDYLENLNVNLDHPKLSGETTVQSAVTEVAAMVGENVKFR 271
Query: 444 RAECWKANSEDVKIAGYTHPAPXXXXXXXSGKYGALLA--YKQPND-VEDIGRQLCQHIV 274
R + V + Y H P +G L A P D ++ +G+ + HIV
Sbjct: 272 RGFIMSTTAHGV-VCSYMHTCPQPGLGRLAGLI-TLEAEDSNAPLDALQRVGKSIAMHIV 329
Query: 273 GCAP 262
P
Sbjct: 330 ATKP 333
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKF-DKNHGALVELNCETDFVAKNDKFQKMIEDAAI 610
G A A K AGR +G + D G L+E+NCETDFV++ D F+++++D A+
Sbjct: 728 GLAAADKRAGRATAEGRIGSYIHDSRIGVLIEVNCETDFVSRGDIFKELVDDLAM 782
Score = 49.2 bits (112), Expect = 4e-06
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNH-GALVELNCETDFVAKNDKFQKMIEDAAI 610
G + A K + R +GL+ N G ++E+N ETDFVA+N+KF++++ D A+
Sbjct: 969 GLSSADKKSSRLTAEGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVNDLAM 1023
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 654 AKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKM-ELDSEQLGTLHAEGGKKLSEILALF 478
AK+D+ K + A + A P+ K E D +Q G G +SE
Sbjct: 89 AKDDRSSKEESEDAQPTSDSNKISSNADEPVAKSSETDRDQEGDKDHSSGSDISEATI-- 146
Query: 477 IGSVGENAVLRRAECWKANSEDVKIAG 397
+NA+++RA ++ NSE + + G
Sbjct: 147 -----KNAIVKRASYFRENSETITLQG 168
>01_06_0055 + 26030562-26032571
Length = 669
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 348 YGALLAYKQPNDVEDIGRQLCQHIVGCAPTKIG 250
+G+LLA + + D+G+ + QHIV AP +G
Sbjct: 596 WGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVG 628
>09_04_0640 -
19166953-19167285,19167631-19168449,19169057-19169163,
19170070-19170154
Length = 447
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 708 FDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK 598
F+K+ L E CETDF++K D K + +FK
Sbjct: 101 FNKDTLGLDEHVCETDFISKVDHILKRHSGTCVKTFK 137
>08_01_0838 - 8185083-8185910
Length = 275
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 258 KIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTI 160
K+GD E+++ ++E C F E +DP + +
Sbjct: 104 KLGDAEEEEDDDEDEEEKCRRFAEKCIDPYFIV 136
>02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,
2333878-2334035,2335001-2335083,2336364-2336468,
2336659-2336756,2337136-2337256,2337366-2337416,
2337987-2338179,2338277-2338845,2338964-2339017,
2339250-2339412,2340155-2340417,2340530-2340717,
2341875-2341945,2342021-2342309,2343962-2344027,
2344186-2344303,2344468-2344575,2344656-2344805,
2344892-2345065,2345161-2345232
Length = 1164
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 318 NDVEDIGRQLCQHIVGCAPTKIGDKEKDKPAKNSDDETC 202
ND +++ R C P ++G+ K+ +SDD+ C
Sbjct: 933 NDSKELERVFAAIAQQCCPNRVGNSGKNLLLPSSDDDAC 971
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 671 QLSSTRAPWFLSNLTATNPWRAVL 742
Q++ PWFLS T PW +VL
Sbjct: 367 QVAWVTGPWFLSIFTNVLPWESVL 390
>03_05_1064 -
30058253-30058467,30058549-30058762,30058846-30058936,
30059361-30059617,30059702-30059902,30059975-30060065,
30060510-30060573,30060754-30061021,30061118-30061249
Length = 510
Score = 27.9 bits (59), Expect = 9.5
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = -1
Query: 705 DKNHGALVELNCETDFVAKNDKF-QKMIEDAAIASFKFAHTKLQAKGPITKMELDSEQLG 529
D N G +E ++D A+ K + AA + F T L P ++ + +L
Sbjct: 303 DSNKGKKIEA-ADSDSDAEMKKLCDSSVSKAAKMAAGFT-TALGGLSPNEIVKRTTNRLE 360
Query: 528 TLHAEGGKKLSEILALFIGS---VGENAVLRRAECWKANSE-DVKI 403
T+H+EG +LSE+ L + +G++ + ++ + E DVKI
Sbjct: 361 TIHSEGVHRLSEMCCLAVSQLLLLGKSVISASSKPKNEDDENDVKI 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,406,252
Number of Sequences: 37544
Number of extensions: 497463
Number of successful extensions: 1495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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