Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O12
(774 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L37936-1|AAC37577.1| 294|Homo sapiens elongation factor Ts prot... 158 2e-38
AF110399-1|AAD20224.1| 325|Homo sapiens elongation factor Ts pr... 158 2e-38
BC093068-1|AAH93068.1| 325|Homo sapiens TSFM protein protein. 155 1e-37
BC022862-1|AAH22862.1| 346|Homo sapiens Ts translation elongati... 142 1e-33
U77949-1|AAB38317.1| 560|Homo sapiens Cdc6-related protein prot... 31 3.5
BC025232-1|AAH25232.1| 560|Homo sapiens cell division cycle 6 h... 31 3.5
AY150310-1|AAN10296.1| 560|Homo sapiens CDC6 cell division cycl... 31 3.5
AF022109-1|AAC52071.1| 560|Homo sapiens HsCdc18p protein. 31 3.5
>L37936-1|AAC37577.1| 294|Homo sapiens elongation factor Ts
protein.
Length = 294
Score = 158 bits (383), Expect = 2e-38
Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 7/236 (2%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA 592
GW+KA KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ +
Sbjct: 59 GWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHC 118
Query: 591 HTKLQAKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRAECWKANS 418
T +K L+S +L L A ++ L + LAL IG +GEN +L+RA W
Sbjct: 119 QTLKDQPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGENMILKRA-AWVKVP 177
Query: 417 EDVKIAGYTHPA--PXXXXXXXSGKYGALL---AYKQPNDVEDIGRQLCQHIVGCAPTKI 253
+ Y H A GKYGAL+ +Q ++ED+GR+L QH+VG AP +
Sbjct: 178 SGFYVGSYVHGAMQSPSLHKLVLGKYGALVICETSEQKTNLEDVGRRLGQHVVGMAPLSV 237
Query: 252 GDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCGEVPES 85
G + D+P + ET ++ Q YLLDPS T+ + +Q V ++D+VRF CGE E+
Sbjct: 238 GSLD-DEP--GGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRFECGEGEEA 290
>AF110399-1|AAD20224.1| 325|Homo sapiens elongation factor Ts
protein.
Length = 325
Score = 158 bits (383), Expect = 2e-38
Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 7/236 (2%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA 592
GW+KA KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ +
Sbjct: 90 GWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHC 149
Query: 591 HTKLQAKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRAECWKANS 418
T +K L+S +L L A ++ L + LAL IG +GEN +L+RA W
Sbjct: 150 QTLKDQPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGENMILKRA-AWVKVP 208
Query: 417 EDVKIAGYTHPA--PXXXXXXXSGKYGALL---AYKQPNDVEDIGRQLCQHIVGCAPTKI 253
+ Y H A GKYGAL+ +Q ++ED+GR+L QH+VG AP +
Sbjct: 209 SGFYVGSYVHGAMQSPSLHKLVLGKYGALVICETSEQKTNLEDVGRRLGQHVVGMAPLSV 268
Query: 252 GDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCGEVPES 85
G + D+P + ET ++ Q YLLDPS T+ + +Q V ++D+VRF CGE E+
Sbjct: 269 GSLD-DEP--GGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRFECGEGEEA 321
>BC093068-1|AAH93068.1| 325|Homo sapiens TSFM protein protein.
Length = 325
Score = 155 bits (377), Expect = 1e-37
Identities = 89/236 (37%), Positives = 132/236 (55%), Gaps = 7/236 (2%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA 592
GW+KA KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ +
Sbjct: 90 GWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHC 149
Query: 591 HTKLQAKGPITKMELDSEQLGTLHAEGGKK--LSEILALFIGSVGENAVLRRAECWKANS 418
T +K L+S +L L A ++ L + LAL IG +GE +L+RA W
Sbjct: 150 QTLKDQPSAYSKGFLNSSELSGLPAGPDREGSLKDQLALAIGKLGETMILKRA-AWVKVP 208
Query: 417 EDVKIAGYTHPA--PXXXXXXXSGKYGALL---AYKQPNDVEDIGRQLCQHIVGCAPTKI 253
+ Y H A GKYGAL+ +Q ++ED+GR+L QH+VG AP +
Sbjct: 209 SGFYVGSYVHGAMQSPSLHKLVLGKYGALVICETSEQKTNLEDVGRRLGQHVVGMAPLSV 268
Query: 252 GDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFSCGEVPES 85
G + D+P + ET ++ Q YLLDPS T+ + +Q V ++D+VRF CGE E+
Sbjct: 269 GSLD-DEP--GGEAETKMLSQPYLLDPSITLGQYVQPQGVSVVDFVRFECGEGEEA 321
>BC022862-1|AAH22862.1| 346|Homo sapiens Ts translation elongation
factor, mitochondrial protein.
Length = 346
Score = 142 bits (345), Expect = 1e-33
Identities = 93/257 (36%), Positives = 140/257 (54%), Gaps = 28/257 (10%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKF- 595
GW+KA KL GR +GL+ + + N LVE+NCETDFV++N KFQ +++ A+ +
Sbjct: 90 GWSKAAKLQGRKTKEGLIGLLQEGNTTVLVEVNCETDFVSRNLKFQLLVQQVALGTMMHC 149
Query: 594 --------AHTKLQAKGPIT----------KME--LDSEQLGTLHAEGGKK--LSEILAL 481
A++K+Q P+ +E L+S +L L A ++ L + LAL
Sbjct: 150 QTLKDQPSAYSKVQWLTPVNLALWEAEAGGSLEGFLNSSELSGLPAGPDREGSLKDQLAL 209
Query: 480 FIGSVGENAVLRRAECWKANSEDVKIAGYTHPAPXXXXXXXS--GKYGALL---AYKQPN 316
IG +GEN +L+RA W + Y H A GKYGAL+ +Q
Sbjct: 210 AIGKLGENMILKRA-AWVKVPSGFYVGSYVHGAMQSPSLHKLVLGKYGALVICETSEQKT 268
Query: 315 DVEDIGRQLCQHIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHN 136
++ED+GR+L QH+VG AP +G + D+P + ET ++ Q YLLDPS T+ + +Q
Sbjct: 269 NLEDVGRRLGQHVVGMAPLSVGSLD-DEPG--GEAETKMLSQPYLLDPSITLGQYVQPQG 325
Query: 135 VEIIDYVRFSCGEVPES 85
V ++D+VRF CGE E+
Sbjct: 326 VSVVDFVRFECGEGEEA 342
>U77949-1|AAB38317.1| 560|Homo sapiens Cdc6-related protein
protein.
Length = 560
Score = 31.5 bits (68), Expect = 3.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 282 HIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFS 106
H+ C+P K G KE P ++ L+F L S + E+ + H +I+ VR S
Sbjct: 69 HLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKILSSVRKS 127
>BC025232-1|AAH25232.1| 560|Homo sapiens cell division cycle 6
homolog (S. cerevisiae) protein.
Length = 560
Score = 31.5 bits (68), Expect = 3.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 282 HIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFS 106
H+ C+P K G KE P ++ L+F L S + E+ + H +I+ VR S
Sbjct: 69 HLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKILSSVRKS 127
>AY150310-1|AAN10296.1| 560|Homo sapiens CDC6 cell division cycle 6
homolog (S. cerevisiae) protein.
Length = 560
Score = 31.5 bits (68), Expect = 3.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 282 HIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFS 106
H+ C+P K G KE P ++ L+F L S + E+ + H +I+ VR S
Sbjct: 69 HLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKILSSVRKS 127
>AF022109-1|AAC52071.1| 560|Homo sapiens HsCdc18p protein.
Length = 560
Score = 31.5 bits (68), Expect = 3.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 282 HIVGCAPTKIGDKEKDKPAKNSDDETCLIFQEYLLDPSYTIEEILQKHNVEIIDYVRFS 106
H+ C+P K G KE P ++ L+F L S + E+ + H +I+ VR S
Sbjct: 69 HLPPCSPPKQGKKENGPPHSHTLKGRRLVFDNQLTIKSPSKRELAKVHQNKILSSVRKS 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,270,275
Number of Sequences: 237096
Number of extensions: 2801612
Number of successful extensions: 5915
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5902
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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