Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O12
(774 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical pr... 128 3e-30
D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation fact... 128 3e-30
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 31 1.2
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical... 29 3.7
AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine r... 29 3.7
Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical pr... 28 8.5
>Z78198-4|CAB01570.1| 316|Caenorhabditis elegans Hypothetical
protein F55C5.5 protein.
Length = 316
Score = 128 bits (310), Expect = 3e-30
Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 24/248 (9%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA 592
GWAKA KL R GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A
Sbjct: 71 GWAKAAKLGTRVTSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLA 128
Query: 591 HTKLQAKGPITKMELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSED 412
K Q+ +K++ + LG L GK + E+L+L IG +GEN +RR + +KA E
Sbjct: 129 KAKPQSISSGSKLQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEG 187
Query: 411 VKIAGYTHPAPXXXXXXXSGKYGALLAYKQ--PNDV--EDIGRQLCQHIVGCAPTKIGD- 247
+ G +HP G++ +L+A Q P + + + Q+CQHI+G +P +G+
Sbjct: 188 TTLFGASHP-KDGTDDIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGEA 246
Query: 246 ----------KEKDKPAKNSD---------DETCLIFQEYLLDPSYTIEEILQKHNVEII 124
+ ++ N+D ET L+ Q ++L+PS ++ E L+ HN I+
Sbjct: 247 AESVKTQEGLRSQEGHDPNADPVVVTNIDESETALLRQAFMLNPSQSVHEYLKSHNANIL 306
Query: 123 DYVRFSCG 100
D+VR G
Sbjct: 307 DFVRVELG 314
>D87850-1|BAA13470.1| 316|Caenorhabditis elegans elongation factor
Ts homologue protein.
Length = 316
Score = 128 bits (310), Expect = 3e-30
Identities = 82/248 (33%), Positives = 133/248 (53%), Gaps = 24/248 (9%)
Frame = -1
Query: 771 GWAKAXKLAGRTALQGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA 592
GWAKA KL R GLV+V D + A+VEL+CETDFVA++ F+ ++ + I++ A
Sbjct: 71 GWAKAAKLGTRVTSNGLVSVVTDNSTAAVVELSCETDFVARSGAFKDLLSN--ISNSVLA 128
Query: 591 HTKLQAKGPITKMELDSEQLGTLHAEGGKKLSEILALFIGSVGENAVLRRAECWKANSED 412
K Q+ +K++ + LG L GK + E+L+L IG +GEN +RR + +KA E
Sbjct: 129 KAKPQSISSGSKLQEFTYDLGDLTDSDGKNMREVLSLSIGKLGENMTVRRVKAFKA-PEG 187
Query: 411 VKIAGYTHPAPXXXXXXXSGKYGALLAYKQ--PNDV--EDIGRQLCQHIVGCAPTKIGD- 247
+ G +HP G++ +L+A Q P + + + Q+CQHI+G +P +G+
Sbjct: 188 TTLFGASHP-KDGTDDIPMGRFISLIALNQSSPGSISSQQLAGQICQHIIGMSPESLGEA 246
Query: 246 ----------KEKDKPAKNSD---------DETCLIFQEYLLDPSYTIEEILQKHNVEII 124
+ ++ N+D ET L+ Q ++L+PS ++ E L+ HN I+
Sbjct: 247 AESVKTQEGLRSQEGHDPNADPVVVTNIDESETALLRQAFMLNPSQSVHEYLKSHNANIL 306
Query: 123 DYVRFSCG 100
D+VR G
Sbjct: 307 DFVRVELG 314
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = -2
Query: 443 VPSAGKRTARMSRSQVIPIQRLAVLVIIPLENMGPCSLTNSQTT*KTSAGNYASTSSAVH 264
VPS + S + + LA+ + P + T+S++ T+A A+ +A
Sbjct: 2732 VPSTPTPSTSASAANA-QLMALALAQQVQQAQQTPSTPTSSKSRSATAAAQAAAAQAAAS 2790
Query: 263 PQKSVTKKKTNQLRTQMM 210
Q ++TK++ L+ QMM
Sbjct: 2791 QQDAITKQQLEMLQMQMM 2808
>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
protein Y53F4B.21 protein.
Length = 1099
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = -2
Query: 245 KKKTNQLRTQMMKHVLFSRNTCSIHPIRLRKSYRNTMLKSLIMLDSLAEKYLNLVCQESK 66
KK + L + + +R C I+ ++ +YR ++K + + Y ++C E K
Sbjct: 948 KKYMDDLESNTRSLIFTNRPDCPINSTKMHAAYRLGLVKEMFERVAEHRNYTKMMCVEFK 1007
Query: 65 SNL 57
S L
Sbjct: 1008 SLL 1010
>AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine
receptor, class w protein91 protein.
Length = 350
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 179 SKYSWKIRHVSSSEFLAGLSFSLSPIFVGAQPTMCWHSC 295
SKY+ ++R+ S F+ G S +F+ + + C++ C
Sbjct: 140 SKYASEVRYQKMSMFIFGFKSSAFSVFISSLMSSCFYLC 178
>Z83122-4|CAB05602.2| 664|Caenorhabditis elegans Hypothetical
protein R11A5.7 protein.
Length = 664
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -2
Query: 437 SAGKRTARMSRSQVIPIQRLAVLVIIPLENMGPCSLTNSQTT*KTSAGNYASTSSAVHPQ 258
S+G T+R + S + ++ + ++ + G S T S TT KTS + ++TS A P
Sbjct: 486 SSGSNTSRKTISDLQMRKQQYRMRLLASQAAG--STTRSTTTLKTSTTSVSTTSEATSPS 543
Query: 257 KS 252
K+
Sbjct: 544 KT 545
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,111,753
Number of Sequences: 27780
Number of extensions: 437325
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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