Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O11
(361 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 166 8e-43
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 166 8e-43
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 79 2e-16
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 79 2e-16
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 79 2e-16
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 48 3e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 35 0.003
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 6.2
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 6.2
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 24 8.2
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 166 bits (404), Expect = 8e-43
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 169
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK I
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQI 95
Query: 168 CRKCYARLHPRATNCRKTKCGHTNNLRP 85
CRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 96 CRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 166 bits (404), Expect = 8e-43
Identities = 78/88 (88%), Positives = 79/88 (89%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 169
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSL+ LA KYNCEK I
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQI 95
Query: 168 CRKCYARLHPRATNCRKTKCGHTNNLRP 85
CRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 96 CRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 79.0 bits (186), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 79.0 bits (186), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 79.0 bits (186), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 113 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 79.0 bits (186), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 79.0 bits (186), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 79.0 bits (186), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 341 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 79.0 bits (186), Expect = 2e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 48.4 bits (110), Expect = 3e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -2
Query: 336 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 223
QQRLI+AGKQ+ D + Y+++ S LHLVL LRGG+
Sbjct: 40 QQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.003
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 336 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 235
+QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 43 RQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 6.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -3
Query: 290 LFQTITSRKNPHFTW 246
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 6.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 300 DGRTLSDYNIQKESTLHLVLRLR 232
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 296 PSSNCFPAKMRRCW*SAGRIHL 361
P +NCF A + RC S I+L
Sbjct: 589 PDANCFLATVARCMKSENTINL 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,338
Number of Sequences: 5004
Number of extensions: 27616
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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