Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O11
(361 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 158 1e-39
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 158 1e-39
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 80 4e-16
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 79 9e-16
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 79 9e-16
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 53 7e-08
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 40 4e-04
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 37 0.004
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 36 0.011
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 36 0.011
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 31 0.18
Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical pr... 29 0.74
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 29 0.98
U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical pr... 28 2.3
Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z82274-3|CAB05229.1| 435|Caenorhabditis elegans Hypothetical pr... 27 3.9
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 27 3.9
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical... 26 6.9
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 158 bits (383), Expect = 1e-39
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 169
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSLR LA KYNC+K I
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQI 95
Query: 168 CRKCYARLHPRATNCRKTKCGHTNNLR 88
CRKCYARL PRA+NCRK KCGH++ LR
Sbjct: 96 CRKCYARLPPRASNCRKKKCGHSSELR 122
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 158 bits (383), Expect = 1e-39
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 169
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSLR LA KYNC+K I
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKQI 95
Query: 168 CRKCYARLHPRATNCRKTKCGHTNNLR 88
CRKCYARL PRA+NCRK KCGH++ LR
Sbjct: 96 CRKCYARLPPRASNCRKKKCGHSSELR 122
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 80.2 bits (189), Expect = 4e-16
Identities = 40/43 (93%), Positives = 40/43 (93%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTI 220
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG I
Sbjct: 797 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGDI 838
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 113 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 341 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 417 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 493 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 569 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 645 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 721 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 113 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 341 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 417 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 37 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 113 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 189 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 265 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 341 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 417 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 456
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 493 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 532
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 569 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 608
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 645 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
P D QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 721 PPD-QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 760
Score = 79.0 bits (186), Expect = 9e-16
Identities = 39/43 (90%), Positives = 40/43 (93%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTI 220
P D QQRLIFAGKQLEDGRTLSDYNIQK+STLHLVLRLRGG I
Sbjct: 797 PPD-QQRLIFAGKQLEDGRTLSDYNIQKQSTLHLVLRLRGGDI 838
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 52.8 bits (121), Expect = 7e-08
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = -2
Query: 336 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
QQRLIFAGKQ+ D +T +DY + S LHLVL LRGG
Sbjct: 40 QQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 40.3 bits (90), Expect = 4e-04
Identities = 22/39 (56%), Positives = 25/39 (64%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 232
P D QQRLIF QLE+ R L YNI+ E +HLV R R
Sbjct: 197 PPD-QQRLIFGRAQLENDRALFAYNIRDEDIIHLVSRHR 234
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 303 EDGRTLSDYNIQKESTLHL 247
+D RT+SDYNI+ STL L
Sbjct: 135 KDQRTISDYNIKNGSTLRL 153
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -2
Query: 327 LIFAGKQLEDGRTLSDYNIQKESTLHLVLR 238
L F+GK+LED ++ DYNIQK ST+ + R
Sbjct: 195 LSFSGKRLEDHCSIGDYNIQKSSTITMYFR 224
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 35.5 bits (78), Expect = 0.011
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
PA+ +QRL +AG+QLED SD I E+T+++ L L GG
Sbjct: 35 PAE-EQRLCYAGRQLED----SDCGIDSEATIYVNLELLGG 70
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 35.5 bits (78), Expect = 0.011
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = -2
Query: 348 PADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 226
PA+ +QRL +AG+QLED SD I E+T+++ L L GG
Sbjct: 35 PAE-EQRLCYAGRQLED----SDCGIDSEATIYVNLELLGG 70
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 31.5 bits (68), Expect = 0.18
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 330 RLIFAGKQLEDGRTLSDYNIQKESTLHL 247
R++ K LED TL+ YNIQ+ STL L
Sbjct: 214 RMVLRDKVLEDDHTLAYYNIQEGSTLGL 241
>Z80215-7|CAB02274.1| 674|Caenorhabditis elegans Hypothetical
protein C36B1.9 protein.
Length = 674
Score = 29.5 bits (63), Expect = 0.74
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -2
Query: 168 CRKCYARLHPRATNCRKTKCGHT 100
CR CY H + R +CGHT
Sbjct: 63 CRVCYDEYHSSSNQARVLQCGHT 85
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -2
Query: 330 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 232
R++ GK LED +L+ YNIQ+ + + L L+
Sbjct: 237 RMVLRGKLLEDHHSLAYYNIQEGALIWLYSHLK 269
>U80452-5|AAB37859.1| 180|Caenorhabditis elegans Hypothetical
protein C16C8.5 protein.
Length = 180
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = -2
Query: 327 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTI 220
L + G++L+D R++ YNI + ++L + + T+
Sbjct: 129 LYYGGQKLQDNRSIGSYNIDQSREIYLKKKKKLSTL 164
>Z82274-4|CAB05228.1| 429|Caenorhabditis elegans Hypothetical
protein JC8.6b protein.
Length = 429
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/86 (22%), Positives = 30/86 (34%)
Frame = -2
Query: 351 RPADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKM 172
+PA + + G ++ + Y K+ H+ L+ + P R NC K
Sbjct: 120 QPASLPRTVQPMGLEMGNSEQRKVYIDMKDHVSHIRLKTKKKVFAPGQR---KPCNCTKS 176
Query: 171 ICRKCYARLHPRATNCRKTKCGHTNN 94
C K Y CR C +N
Sbjct: 177 QCLKLYCDCFANGEFCRDCNCKDCHN 202
>Z82274-3|CAB05229.1| 435|Caenorhabditis elegans Hypothetical
protein JC8.6a protein.
Length = 435
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/86 (22%), Positives = 30/86 (34%)
Frame = -2
Query: 351 RPADYQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKM 172
+PA + + G ++ + Y K+ H+ L+ + P R NC K
Sbjct: 126 QPASLPRTVQPMGLEMGNSEQRKVYIDMKDHVSHIRLKTKKKVFAPGQR---KPCNCTKS 182
Query: 171 ICRKCYARLHPRATNCRKTKCGHTNN 94
C K Y CR C +N
Sbjct: 183 QCLKLYCDCFANGEFCRDCNCKDCHN 208
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 312 KQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMK 190
K ++D R L DY+ K ++L L +I+P LR L +K
Sbjct: 1173 KMIDDIRGLLDYDTAKIGQINLALYHFSDSIQPVLRRLDIK 1213
>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
protein Y57A10A.31 protein.
Length = 1048
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 183 CEKMICRKCYARLHPRAT 130
C++ CRKC A HP T
Sbjct: 928 CDRSYCRKCLAEPHPDDT 945
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,344,756
Number of Sequences: 27780
Number of extensions: 163030
Number of successful extensions: 439
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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