Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O08
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    28   1.7  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    27   4.0  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   9.3  

>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 286 FLRSLLKDLCRN*ILLKIVKLHTYQSTD 203
           F+ SL+ +LC++ +LLKI+    Y   D
Sbjct: 262 FVLSLINELCKSEVLLKILSKRPYHGLD 289


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 417 KISRNNNYCSRIAGKFEAILYLRQDCGATGQLRRDR 524
           ++  NN Y  +   + + + Y+ ++C  T QLR  R
Sbjct: 103 ELDPNNTYIQKSLHRLKEVYYIYRECAETWQLRHLR 138


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 694 RRACSEQGPHPSLGYLQYGTSHLWGAN-NSRRGWSRKRTSAPQM 566
           RR C E  P+P+  Y    T  L  A+  +  GW  +R    Q+
Sbjct: 114 RRWCLENAPYPNWNYEMMITEKLLSADARNFHGWHYRRYVVSQI 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,946
Number of Sequences: 5004
Number of extensions: 60871
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)