Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_O08
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0884 - 21283761-21283877,21283965-21284016,21284119-212841... 31 0.78
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 31 1.0
06_01_0815 + 6166861-6166953,6167074-6167173,6168569-6168639,616... 30 1.8
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732 29 4.2
10_08_0844 - 20963774-20963792,20964111-20964256,20964787-209649... 29 5.5
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 29 5.5
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 28 9.6
02_01_0648 + 4828668-4829585,4829677-4830330 28 9.6
>10_08_0884 -
21283761-21283877,21283965-21284016,21284119-21284187,
21284475-21284587,21284694-21284753,21284834-21285136
Length = 237
Score = 31.5 bits (68), Expect = 0.78
Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Frame = +3
Query: 534 ATRGIEP*TLLICGADVRFRLHPRRLLLAPQ-----RCEVPYCK*PRDGCGPCSE--QAL 692
A + +EP LL GAD RR L PQ R P +G G E AL
Sbjct: 3 AAKPVEPLPLLRAGADTAAAAALRRFQLPPQPPRSVRANAIRASPPSNGAGSPDELPAAL 62
Query: 693 RPRALSRTSLRGGCGMSSPLSLDMSTA 773
P A R R GCG S L +D+ A
Sbjct: 63 LPNAARR---RDGCGFS--LGVDLGEA 84
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 69 FFNKIKKLSLTETSKCCNLQMIFYFFHSGILIRIFGQRN 185
FFN K + + CNL +++Y H G ++R+FG N
Sbjct: 102 FFNAKKDSDIAILCQVCNL-LLYYVKHGGDVLRLFGGTN 139
>06_01_0815 +
6166861-6166953,6167074-6167173,6168569-6168639,
6169873-6170064,6170168-6170290
Length = 192
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 594 LHPRRLLLAPQRCEVPYCK*PRDGCGPCSEQALRP 698
LH R++ +AP+R VP K PR G G +RP
Sbjct: 146 LHGRQIKVAPKRTNVPGMKQPRGGRGFGGHPYMRP 180
>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
Length = 1050
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 682 SEQGPHPSLGYLQYGTSHLWGANNSRRGWSRKRTSAPQMSN-VHGSMP 542
SE G HP+L Y+ ++ L+G + R G K T+ +N + G +P
Sbjct: 443 SEMGLHPNLVYIDMSSNKLYGQLSHRWGECAKLTTLRASNNRITGVIP 490
>10_08_0844 -
20963774-20963792,20964111-20964256,20964787-20964962,
20965061-20965216,20965287-20967102
Length = 770
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 710 AERPRPQSLLGTRPASISRLLAVRDFTPLGCQQQPPWVESETDIG 576
A RP P+ L +R +RL A R F P +PP ++ G
Sbjct: 17 ASRPPPRLLPPSRRPPAARLAATRRFRPPTADDEPPEAAEDSSHG 61
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 604 RGWSRKRTSAPQMSNVHGSMPRVALVLRSRRSWPVAPQSC 485
RG RK TSAP+ +N A++ RSR +P+ C
Sbjct: 221 RGRKRKATSAPKYNNKKAKKAVAAMLTRSRED--CSPEDC 258
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 663 GCGPCSEQALRPRALSRTSLRGGCGMSSPLSL-DMSTA 773
GCG +P LSR+ +G C SS S+ D ST+
Sbjct: 400 GCGVGEIHGSKPSELSRSKEKGECSQSSKSSMGDYSTS 437
>02_01_0648 + 4828668-4829585,4829677-4830330
Length = 523
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 591 RLHPRRLLLAPQRCEVP 641
RLHP LLAP+RC+ P
Sbjct: 375 RLHPPAPLLAPRRCDSP 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,322,019
Number of Sequences: 37544
Number of extensions: 395985
Number of successful extensions: 1108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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