Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O06
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.29 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.68 
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    27   0.68 
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    27   0.68 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   0.90 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   1.6  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    24   6.3  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   6.3  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.3  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    24   6.3  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    24   8.3  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    24   8.3  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    24   8.3  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.29
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 176 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 289
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 169  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 267
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 163 KEVPQYKLITPAVVSERLKVRG 98
           KEVP +K I+ +V+ +R+K+ G
Sbjct: 32  KEVPAFKFISVSVLVDRMKING 53



 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 93  LARRALIELREKGLIKQVVQH 31
           LAR A+ +L E+G+I++V QH
Sbjct: 55  LARIAIRDLAERGVIQKVDQH 75


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 163 KEVPQYKLITPAVVSERLKVRG 98
           KEVP +K I+ +V+ +R+K+ G
Sbjct: 32  KEVPAFKFISVSVLVDRMKING 53



 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 93  LARRALIELREKGLIKQVVQH 31
           LAR A+ +L E+G+I++V QH
Sbjct: 55  LARIAIRDLAERGVIQKVDQH 75


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 0.90
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 295 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 197
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 31  MLDYLFDETFFPKLDECSSR 90
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -1

Query: 307 PNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCXKEV 155
           PNS+K+ +R  K P++     +S P+   +T   +R   +   +RN  +++
Sbjct: 153 PNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRNLQEQL 200


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 190 SNNTWLFNLSRTFPLDHFFFLAL 258
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 248 SWLCRHRILPSSSVFFEAVW 307
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 80  HSSSLGKKVSSNR*SNXHGQVIYT 9
           H   +GK V S R S+  GQ+ +T
Sbjct: 80  HFEEIGKTVKSERDSDGSGQISFT 103


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 278 SSSVFFEAVWPKPSRPSWAASLNWKAI 358
           S  V  E+V+PKP   S+   +N K++
Sbjct: 389 SDKVKGESVYPKPESESYDVEMNGKSL 415


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +1

Query: 124 RQQV*LACTVGLPXYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 267
           R  V + C   L  + F  +G+ N         T P  +F+ L  PPP
Sbjct: 35  RWVVVIICIAAL-IFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 143 LVLWDFLXTVSHMWVYQTT 199
           LVLW FL  +  +W+Y  T
Sbjct: 256 LVLWLFLSFLLALWIYYLT 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,452
Number of Sequences: 5004
Number of extensions: 28854
Number of successful extensions: 113
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)