Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_O04
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50027-2|CAA90335.1|  188|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z98853-2|CAB57902.2|  371|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z50027-2|CAA90335.1|  188|Caenorhabditis elegans Hypothetical
           protein C39B10.3 protein.
          Length = 188

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -1

Query: 317 EKMIGHLINHEAEFWEELKAKYDPTNEFTKKYETELKRVTA 195
           E+M+  L++   ++ EEL+ K D   + TK+YE EL++V A
Sbjct: 81  EEMLTFLVDASKKYDEELEEKRDENKKATKEYE-ELEKVAA 120


>Z98853-2|CAB57902.2|  371|Caenorhabditis elegans Hypothetical
           protein R08A2.2 protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
 Frame = +1

Query: 232 VNSLVGSYLAFSSSQNSASWLMR*PIIFSVPPFCALVHLAQLVSRASLM*DLSSLPS--A 405
           +N L G Y   +  +    W      +F+  P CA V    L     +  + +S  S  A
Sbjct: 136 MNRLYGFYEELARKRGGRMWRQY-QNVFNELPLCARVGQRILCMHGGISQNCNSWESFKA 194

Query: 406 VHWPFSRMQCT*GMRSRRLDMSWSRSTVSYLSVYCSGRARATAVKASRQTITVFI 570
           +  P + + C  G++   +D+ W+  T    + +   + RA +V    + + VF+
Sbjct: 195 LKKPNTPLTCDEGLQ---VDLMWADPTQDKCNTFAMNKQRAISVVFGEKGLDVFL 246


>AF043702-3|AAK21496.2|  474|Caenorhabditis elegans Hypothetical
           protein W03D8.1 protein.
          Length = 474

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -2

Query: 526 PSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTAL 347
           P+ A + T T TT    T +  T  +   T + S+K   +    + L  T++KP +P   
Sbjct: 230 PTTATDPTTTTTTTEATTVTSTTTPAETTTAMKSTKEQVLTTTRKALE-TTKKPEKPEKP 288

Query: 346 NAPKR 332
             P+R
Sbjct: 289 EKPER 293


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 442 PTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVEPKR*LVTSSTTKPNSGRS 266
           P  + +   + VP+     + T+R P+R T    P+ K V  +    TSS   P+  +S
Sbjct: 626 PASVIAPSSSVVPKSQPRPSPTTRPPTRATIRPTPQNKAVTSRPAPATSSVVTPSPSQS 684


>U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical
           protein T13C2.3a protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/92 (27%), Positives = 41/92 (44%)
 Frame = -2

Query: 499 TNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVE 320
           T+TT S  T++  T      T   S+     P+ ++   L  +   RP  ++  KR++  
Sbjct: 320 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQI-YRPRPIDQMKRRKQT 378

Query: 319 PKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRN 224
           PK+  V    TK  SG   RP  +  ++S  N
Sbjct: 379 PKKCRVAYVRTK--SGSRTRPVLVCDSASAAN 408


>U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical
           protein T13C2.3b protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/92 (27%), Positives = 41/92 (44%)
 Frame = -2

Query: 499 TNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKPSRPTALNAPKRKRVE 320
           T+TT S  T++  T      T   S+     P+ ++   L  +   RP  ++  KR++  
Sbjct: 395 TSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYPPLPPQI-YRPRPIDQMKRRKQT 453

Query: 319 PKR*LVTSSTTKPNSGRS*RPNTIPPTSSQRN 224
           PK+  V    TK  SG   RP  +  ++S  N
Sbjct: 454 PKKCRVAYVRTK--SGSRTRPVLVCDSASAAN 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,635,616
Number of Sequences: 27780
Number of extensions: 364850
Number of successful extensions: 1097
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)