Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N19
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    33   0.024
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    28   1.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   4.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.3  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   6.3  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   8.3  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   8.3  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 33.5 bits (73), Expect = 0.024
 Identities = 18/85 (21%), Positives = 31/85 (36%)
 Frame = -3

Query: 553 PVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIALGRSVCKSKAT 374
           PV+A +NG     G  L       +  + + F+ P    G F           +     T
Sbjct: 154 PVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFGT 213

Query: 373 YMLFTGEPINAQEAYESGLVTKVVP 299
           Y+  T + +   +   +G+ T  VP
Sbjct: 214 YLGLTSQIVKGYDCLRTGIATHFVP 238


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 562 SPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGA 443
           S + V  +V  F+TA    L+A+ D +    SS    PG+
Sbjct: 5   SSITVTVRVRPFSTAESANLIASSDRLSFGTSSSLRNPGS 44


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +3

Query: 18  DFTKCLNCCSFDLILXSYL*LHFAFRFSTKLNIPSCPSLLATLSTITFSPKS*ALNKLSS 197
           DF  C +C +    L      HF      + +IPS  SL  ++++++ SP+S   N + +
Sbjct: 81  DFDVCRDCYAKQAFLHPCPKPHFVL---VRSSIPSVASLTCSVNSMSVSPQS---NFMYA 134

Query: 198 IC 203
           IC
Sbjct: 135 IC 136


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 56  YLV--ILSMTPFCFSFFHKTQYTFLSIFTCNIINHY 157
           YLV  I+S  P+   F    QY FLSI   N++N Y
Sbjct: 676 YLVVSIISFDPW-HMFTSFVQYIFLSIMYTNVLNVY 710


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/54 (24%), Positives = 20/54 (37%)
 Frame = +2

Query: 335 FLCIYWFTREKHISCFRFTNRSSKSNSRCGTEYTKVCTRSGKLA*VRTYDYITG 496
           F C   F       CF+ T     S   C  +Y  +C + G  + ++  D   G
Sbjct: 172 FQCNVCFDEFNGTDCFQLTRCGHVSCQSCLRDYYTMCIQEGMFSQIKCIDLDCG 225


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 422  HTWNCSWKI 396
            H+WNCSW I
Sbjct: 1126 HSWNCSWGI 1134


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 449  WCKLWYILFHTWNCSW 402
            W  LW + F T +CSW
Sbjct: 1393 WLLLWDLRFGTLSCSW 1408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,386
Number of Sequences: 5004
Number of extensions: 44362
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)