Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_N19
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0163 + 26400486-26400621,26401477-26401646,26402623-264027... 69 2e-12
03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798 62 2e-10
01_06_0153 - 27044553-27044669,27044842-27044964,27045066-270451... 61 7e-10
02_05_0164 + 26405052-26405208,26405304-26405473,26406278-264063... 52 3e-07
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 48 7e-06
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 47 1e-05
01_06_0729 - 31546464-31546574,31546653-31546694,31546795-315468... 47 1e-05
01_01_0746 + 5772340-5773083 36 0.024
01_07_0023 + 40556545-40556629,40558063-40558253 30 1.2
11_03_0046 - 9309754-9309820,9310414-9311132 27 8.5
>02_05_0163 +
26400486-26400621,26401477-26401646,26402623-26402713,
26402822-26402873,26403462-26403565,26403648-26403724,
26403890-26404069
Length = 269
Score = 69.3 bits (162), Expect = 2e-12
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 2/162 (1%)
Frame = -3
Query: 556 VPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIA-LGRSVCKSK 380
+P IA + G A G +L +CD+ +C +++ P I G L R V +S+
Sbjct: 106 IPTIAVIEGAALGGGLELALSCDLRICGENATLGLPETGLAIIPGAGGTQRLPRIVGRSR 165
Query: 379 ATYMLFTGEPINAQEAYESGLVTKVVPANELDNEVGXXXXXXKHKSRSVISMGKEFFYQQ 200
A M+FTG NA EA GL VPA E + K I M K+ Q
Sbjct: 166 AKEMIFTGRRCNATEAVMMGLANYCVPAGEAHEKALELAREIAQKGPLGIRMAKKAIDQG 225
Query: 199 IELS-LFNAYDLGEKVMVDNVASKDGQEGILSFVEKRKAKWS 77
++ + + +A + + + ++D EG+ +F E+RK +S
Sbjct: 226 MQAADMPSALAVEGECYEQLLHTEDRLEGLAAFAERRKPVYS 267
>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
Length = 268
Score = 62.5 bits (145), Expect = 2e-10
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Frame = -3
Query: 553 PVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIA--LGRSVCKSK 380
P++ + GFA AG ++ CDI+V S+KF A FGIF S G++ L R + ++
Sbjct: 104 PIVGAIAGFAVTAGFEIALACDILVAGRSAKFIDTHAKFGIFPSW-GLSQKLSRVIGPNR 162
Query: 379 ATYMLFTGEPINAQEAYESGLVTKVVPANELDNEVGXXXXXXKHKSRSVISMGKEFFYQQ 200
A + T PI A+ A + GLV +V ++ ++ +R+++ + K
Sbjct: 163 AREVSLTCMPITAEMAEKWGLVNHIVDDTQVLSKAIEVCEAIARNNRNLVVLYKSVINDG 222
Query: 199 IELSLFNAYDLGEKVMVD--NVASKDGQEGILSFVEKRKAK 83
++L L +A L ++ D N +K+ + F++ R +K
Sbjct: 223 LQLDLEHARALEKERAHDYYNGMTKEQFASMQKFIQGRSSK 263
>01_06_0153 -
27044553-27044669,27044842-27044964,27045066-27045161,
27045323-27045370,27046360-27046458,27046554-27046592,
27047032-27047133,27047225-27047347,27047535-27047783
Length = 331
Score = 60.9 bits (141), Expect = 7e-10
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Frame = -3
Query: 586 ELMXSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIA 407
+L I P PVIA V G+A G L CD+ + +D++ F G G F + G +
Sbjct: 156 DLQVQIRRLPKPVIAMVAGYAVGGGHVLHMVCDLTIAADNAIFGQTGPKVGSFDAGYGTS 215
Query: 406 -LGRSVCKSKATYMLFTGEPINAQEAYESGLVTKVVPANELDNEVGXXXXXXKHKSRSVI 230
+ R V KA M F A EA GLV VVP +L+ E S + I
Sbjct: 216 IMSRLVGPKKAREMWFLSRFYTADEADRMGLVNVVVPLADLERETVKWCRKILRNSPTAI 275
Query: 229 SMGKEFFYQQIELSLFNAYDLGEKVMVDNVASKDGQEGILSFVEKRKAKWS 77
+ K + +LG + +++ +EG +++E+R+ +S
Sbjct: 276 RVLKSAL-NAADDGHAGLQELGGNATLIFYGTEEAKEGKNAYMERRRPDFS 325
>02_05_0164 +
26405052-26405208,26405304-26405473,26406278-26406352,
26406570-26406660,26406768-26406848,26407192-26407353,
26407425-26407501,26407670-26407846
Length = 329
Score = 52.4 bits (120), Expect = 3e-07
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 30/186 (16%)
Frame = -3
Query: 556 VPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGI----------FCSTPGIA 407
+P IA V G A G +L +CD+ +C +++ FS P I + S
Sbjct: 138 IPTIAIVEGAAFGGGLELALSCDLRICGENATFSLPETGLAIIPGYVFKMALYFSGGTQR 197
Query: 406 LGRSVCKSKATYMLFTGEPINAQEA--------------------YESGLVTKVVPANEL 287
L R V KS+A ++FTG +A EA +G+V VPA E
Sbjct: 198 LPRIVGKSRAKELIFTGRRFDAVEAVTMGKVGLAPSFLRGVLLHFISTGVVNYCVPAGEA 257
Query: 286 DNEVGXXXXXXKHKSRSVISMGKEFFYQQIELSLFNAYDLGEKVMVDNVASKDGQEGILS 107
K I M K+ Q +E+ L + E+ + ++D EG+ +
Sbjct: 258 YKRALELAQEINQKGPLAIRMAKKAINQGMEVDLSAGLAVEEECYEQVLHTQDRLEGLAA 317
Query: 106 FVEKRK 89
F EKRK
Sbjct: 318 FAEKRK 323
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 47.6 bits (108), Expect = 7e-06
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -3
Query: 553 PVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIA-LGRSVCKSKA 377
P +A ++G A G ++ C + + +++ P G+ G L R V +KA
Sbjct: 106 PSVAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGVIPGFGGTQRLPRLVGLTKA 165
Query: 376 TYMLFTGEPINAQEAYESGLVTKVVPANELDN 281
M+ +PI EA++ GLV +V A++L N
Sbjct: 166 LEMMLLSKPIKGAEAHQLGLVDSLVSADDLVN 197
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = -3
Query: 553 PVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIA-LGRSVCKSKA 377
P +A +NG A G ++ C + +++ P G+ + G L R V +KA
Sbjct: 102 PSVAAINGPALGGGLEISMVCQARISIPTAQLGLPELQLGVIPAFGGTQRLPRLVGLTKA 161
Query: 376 TYMLFTGEPINAQEAYESGLVTKVVPANELDN 281
M+ +PI A+EA++ L+ +V N+L N
Sbjct: 162 LEMMLMSKPIKAEEAHQLALIDAIVSPNDLLN 193
>01_06_0729 -
31546464-31546574,31546653-31546694,31546795-31546896,
31547148-31547246,31547522-31547582,31547659-31547807,
31547963-31548048,31548249-31548333,31548642-31548725,
31548820-31548893,31549035-31549095,31549546-31549614,
31549712-31549795,31549893-31549937
Length = 383
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/88 (28%), Positives = 42/88 (47%)
Frame = -3
Query: 547 IAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGANFGIFCSTPGIALGRSVCKSKATYM 368
+A VNG G +VA V ++ + F+TP A+ G+ + + Y+
Sbjct: 112 VALVNGLVMGGGAAMVAPLKFAVVTEKTVFATPEASVGLHTDCSFSYIHSRLPGYLGEYL 171
Query: 367 LFTGEPINAQEAYESGLVTKVVPANELD 284
TG +NA+E +GL T VP+ +L+
Sbjct: 172 ALTGARLNAKEMIAAGLATHFVPSEKLE 199
>01_01_0746 + 5772340-5773083
Length = 247
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 583 LMXSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKF 458
L+ ++ PVP +A V G A AAGC L D +V S F
Sbjct: 91 LVADLLALPVPTVAAVTGHAAAAGCALALAHDAVVMRASRGF 132
>01_07_0023 + 40556545-40556629,40558063-40558253
Length = 91
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -3
Query: 337 EAYESGLVTKVVPAN-ELDNEVGXXXXXXKHKSRSVISMGKEFFYQQIELSLFNAYDLGE 161
EA E GLVT+V + ELD V KS + K + ++++ +
Sbjct: 2 EAKEMGLVTRVFNSKQELDAGVAKIAKEISEKSAWAVMGTKAVLLRSRDITVEQGLEHVA 61
Query: 160 KVMVDNVASKDGQEGILSFVEKRKAKWS 77
+ S D +E I +F+EKRK +S
Sbjct: 62 TWNAAMLRSNDLEEAIQAFLEKRKPVFS 89
>11_03_0046 - 9309754-9309820,9310414-9311132
Length = 261
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 586 ELMXSIILSPVPVIAKVNGFATAAGCQLVATCDIIVCSDSSKFSTPGA 443
E++ ++ P P A VNG AT+ G L D V + + + P A
Sbjct: 82 EVVRLLLEMPAPTAAAVNGDATSLGLALALAHDHCVVWEGAAVALPEA 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,646,814
Number of Sequences: 37544
Number of extensions: 255608
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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