Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N18
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.71 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.8  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   6.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   6.6  
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    25   8.7  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 17/79 (21%), Positives = 32/79 (40%)
 Frame = -2

Query: 288 PPPWTYASKTSSASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPHTYTNRTCTHTYAAP 109
           P    YA    + + +++ R    R++  S  +LV   SH     + Y++  CTH +  P
Sbjct: 214 PSEVAYAETVRARAGQLELRCKKCRFVLASSDYLV---SHEPKDENNYSHTRCTHYFLEP 270

Query: 108 LPHTHKHMYINXTTTRETC 52
           +      + +     R  C
Sbjct: 271 IRWMQPELELGNLEGRFDC 289


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 190  PTRRRWNPSHQPSSCIYPC 246
            P    WNPS  P  C  PC
Sbjct: 2308 PNLGAWNPSEGPGPCASPC 2326


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 277 DLCFQDELGINKDRYKSLADEMDSTFAE 194
           DLC Q +   N + Y  LA ++D+T AE
Sbjct: 136 DLCMQPDAEENCELYTKLALQIDATNAE 163


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 195 SWLVTKLSHSTYRPHTYTNRTCTHTYAAPLPHTHKHMYI 79
           SW+  K S+ ++       RTCT +  AP+     + YI
Sbjct: 674 SWIGQKYSNVSFEKIDVAERTCTISLNAPILPDDGYAYI 712


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 210 IPPSPSWLVTKLSHSTYRPHTYTNRTCTHTYAAPLPHTHKHM 85
           +  S SWL T  +      H Y+ ++  H  +  +P T KH+
Sbjct: 178 VSKSLSWLETGKTRDNRNNHHYSRKSSPHISSLAVPST-KHL 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,342
Number of Sequences: 5004
Number of extensions: 47362
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)