Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N18
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448...    31   0.96 
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369...    29   3.9  
02_05_0090 - 25742533-25744557                                         29   3.9  
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855...    28   6.8  

>05_03_0248 +
           10942363-10942612,10942702-10943345,10944301-10944816,
           10945085-10945237,10945545-10945637
          Length = 551

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = -2

Query: 279 WTYASKTSSASTRID-TRAWLMRWIPPSPSWLVTKLSHSTYRPHTYTNRTCTH-TYAAPL 106
           W    +     T  D TR   M   P +PSW   +        HT+ N T  H T AA  
Sbjct: 332 WKNDGRPCDGDTATDVTRYSEMIINPETPSWCTRRRIEECPPWHTFRNGTRVHRTDAARF 391

Query: 105 PHTHKHMYINXTTTR 61
           P+   H+Y +    R
Sbjct: 392 PYAAYHVYCSPGNAR 406


>05_03_0626 -
           16335816-16335917,16336331-16336558,16336694-16336973,
           16337596-16338560
          Length = 524

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 288 PPPWTYASKT-SSASTRIDTRAWLMRWIPPSPSWLVTKLSHSTYRPHTYTNRTCTHTYAA 112
           PPP  + S   S +S     R  L+RW PP      T L  S Y P     R     +A 
Sbjct: 95  PPPARHCSTPLSPSSPPFQPRGLLVRWAPPPAPRCSTPL--SPYSPPFRPARLIVR-WAR 151

Query: 111 PLPHTHK 91
           P P  HK
Sbjct: 152 PPPGWHK 158


>02_05_0090 - 25742533-25744557
          Length = 674

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 333 SPALFVVINLSFALRPPPWT-YASKTSSASTRIDTRAWLMRWIPPSPSWLVTKL 175
           +P L   +NLS  +    +  ++S T   ++R    AW  +   P+PS  V+KL
Sbjct: 232 TPLLSAAVNLSAVIEDEAYVGFSSSTGVVASRHYVLAWSFKMDGPAPSLNVSKL 285


>03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,
            8554143-8555386,8556901-8556967,8557059-8557150,
            8557269-8557480,8558541-8558623,8559092-8559122,
            8559770-8559951,8560557-8560616,8561092-8561289,
            8561485-8561539,8562740-8562855,8563012-8563176,
            8563310-8563483,8564134-8564333,8564778-8564882,
            8565063-8565126,8566452-8566718
          Length = 1300

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 271  CFQDELGINKDRYKSLADEMDSTFAELAGY 182
            C +DE+G   + Y  LAD  D     + GY
Sbjct: 994  CMEDEVGETCEAYVELADRNDHASCSITGY 1023


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,582
Number of Sequences: 37544
Number of extensions: 314752
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)