Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N18
         (616 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113483-1|AAI13484.1|  747|Homo sapiens family with sequence si...    38   0.037
AK091138-1|BAC03594.1|  565|Homo sapiens protein ( Homo sapiens ...    38   0.037
AK127759-1|BAC87117.1|  294|Homo sapiens r (EC 1.6.5.3).  protein.     31   2.4  
U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate rece...    31   3.2  
AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate re...    31   3.2  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    31   4.3  
AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens ...    30   5.6  
AK127830-1|BAC87151.1|  190|Homo sapiens protein ( Homo sapiens ...    30   7.5  
AK097452-1|BAC05058.1|  225|Homo sapiens protein ( Homo sapiens ...    30   7.5  

>BC113483-1|AAI13484.1|  747|Homo sapiens family with sequence
           similarity 83, member C protein.
          Length = 747

 Score = 37.5 bits (83), Expect = 0.037
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 172 RELSNQPTRRRW--NPSHQPSSCIYPC*CRARLGSIGPRRWAQSERQVNHNK*SGA*TTI 345
           RE S QP+  R   +P+H     +Y    RA LG +G   W+QS   +NHN  S     +
Sbjct: 386 REASGQPSLHRQLSDPNHGSPPGLY----RANLGKLGAYPWSQSSPALNHNSTSPLTLAV 441

Query: 346 SKGLSPNAEILTLKDHTRPHCSDNPLN 426
              L P +  L       P  S  P N
Sbjct: 442 GSPLLPRSRPLLQFHRGAPALSRFPEN 468


>AK091138-1|BAC03594.1|  565|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33819 fis, clone CTONG2003189. ).
          Length = 565

 Score = 37.5 bits (83), Expect = 0.037
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 172 RELSNQPTRRRW--NPSHQPSSCIYPC*CRARLGSIGPRRWAQSERQVNHNK*SGA*TTI 345
           RE S QP+  R   +P+H     +Y    RA LG +G   W+QS   +NHN  S     +
Sbjct: 204 REASGQPSLHRQLSDPNHGSPPGLY----RANLGKLGAYPWSQSSPALNHNSTSPLTLAV 259

Query: 346 SKGLSPNAEILTLKDHTRPHCSDNPLN 426
              L P +  L       P  S  P N
Sbjct: 260 ESPLLPRSRPLLQFHRGAPALSRFPEN 286


>AK127759-1|BAC87117.1|  294|Homo sapiens r (EC 1.6.5.3).  protein.
          Length = 294

 Score = 31.5 bits (68), Expect = 2.4
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = -2

Query: 174 SHSTYRPHTYTNRTCTHTYA------APLPHTHKHMYINXTTTRETC 52
           +H+    H +T+ TC HT A        L HTH H+Y    T   TC
Sbjct: 149 THAHLHTHAHTS-TCAHTLAHIHTCTLALMHTHAHIYTCTRTLAHTC 194


>U77783-1|AAC15910.1| 1336|Homo sapiens N-methyl-D-aspartate receptor
            2D subunit precursor protein.
          Length = 1336

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
 Frame = -2

Query: 213  WIPPSPSWLVTKLSHSTYR-----PHTYTNRTCTHTYAAPLPHTHKH 88
            W PP P W    L     R      H +  R    T AA  PH H+H
Sbjct: 1207 WAPPPPPWAAGPLPRRRARCGCPRSHPHRPRASHRTPAAAAPHHHRH 1253


>AB209292-1|BAD92529.1|  610|Homo sapiens N-methyl-D-aspartate
           receptor subunit 2D precursor variant protein.
          Length = 610

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
 Frame = -2

Query: 213 WIPPSPSWLVTKLSHSTYR-----PHTYTNRTCTHTYAAPLPHTHKH 88
           W PP P W    L     R      H +  R    T AA  PH H+H
Sbjct: 481 WAPPPPPWAAGPLPRRRARCGCPRSHPHRPRASHRTPAAAAPHHHRH 527


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 171 HSTYRPHTYTN-RTCTHTYAAPLPHTHKHMYINXTTTRETC*HV 43
           H     HT T+  TCT+T      HTH H+Y +  T   TC H+
Sbjct: 124 HMNIHTHTCTHIYTCTYTVVCT--HTHMHIYTHMHT--HTCIHI 163



 Score = 29.9 bits (64), Expect = 7.5
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 171 HSTYRPHTYTNR-TCTHTYAAPLPHTHKHMYINXTTTRETC*H 46
           HS    H YT+  TCT T      HTH H+++   T   T  H
Sbjct: 164 HSDTHLHIYTHTLTCTQTQIHTCTHTHIHIHMPTHTRTYTHMH 206



 Score = 29.5 bits (63), Expect = 9.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 174 SHSTYRPHTYTNRTCTH--TYAAPLPHTHKHMYINXTTTRET 55
           +H    PHT+ + TCTH  ++A    HTH H++++  T   T
Sbjct: 267 THMDTYPHTHIH-TCTHMHSHAHINTHTHAHIHMHMHTHTHT 307


>AK057435-1|BAB71485.1|  170|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32873 fis, clone TESTI2003998, weakly similar to
           T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 170

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -2

Query: 171 HSTYRPHTYT-NRTCTHTYAAPLPHTHKH 88
           HS    HT T   TCTHT+   + H H H
Sbjct: 86  HSHTHAHTQTWTYTCTHTHTHAVTHVHMH 114


>AK127830-1|BAC87151.1|  190|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45933 fis, clone PLACE7003639. ).
          Length = 190

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 449 CCITYLSIFRGLSLQCG-LVWSFSVKISAF 363
           C   +LS F GLSL    L W+FSV +S F
Sbjct: 68  CLSLHLSSFPGLSLSLSSLFWAFSVSVSLF 97


>AK097452-1|BAC05058.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40133 fis, clone TESTI2012231. ).
          Length = 225

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 183 TKLSHSTYRPHTYTNRTCTHTYAAPLPHTHKHMYINXT 70
           T  +H+T+  H  + +  THT   PL  TH H  +  T
Sbjct: 44  THHTHTTHTTHINSYKAFTHTTHTPLTSTHLHTPLTHT 81


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,998,750
Number of Sequences: 237096
Number of extensions: 1779432
Number of successful extensions: 4026
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4014
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)