Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N17
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0026 + 219663-220843,222201-222447,222574-224535                 32   0.23 
06_01_0008 + 141405-142421                                             30   0.71 
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    28   2.9  
10_08_0797 + 20646091-20646519,20646531-20647460                       27   5.0  
11_08_0077 - 28180918-28183269,28183553-28184608                       27   6.6  
07_01_0968 - 8111340-8112067,8112496-8112566,8112663-8112837,811...    27   6.6  
05_03_0162 - 9050981-9051003,9051141-9052273,9052388-9053310,905...    27   6.6  
02_03_0246 - 16807619-16808145,16808208-16808868                       27   6.6  
02_02_0631 - 12397517-12398452,12398693-12398819,12398971-123991...    27   6.6  
11_06_0577 - 25158833-25162864                                         27   8.7  
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099...    27   8.7  
08_02_0682 + 20018879-20019226,20019324-20019656                       27   8.7  

>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +2

Query: 269 PSCAQHQPSPASGPACRDGTTPPRTTQRKHRK*WSSYWNETDEFGGPTC 415
           P  A H    A+GPA   G  PP TT     K  +S  +    FGG  C
Sbjct: 359 PITAVHAAPAAAGPAAAGGLMPPATTVAAFSKPAASLMDSFVPFGGFLC 407


>06_01_0008 + 141405-142421
          Length = 338

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 257 HACRPSCAQHQPS-PASGPACRDGTTPPRTTQRKHRK*WSSYWNETDEFGG 406
           H   P+   H+P+ PAS  A      PPR  +R+ R   S  W     FGG
Sbjct: 252 HHAHPTLGSHRPAAPASASASPSPAPPPRLAERRFR--ISLPWPLRAAFGG 300


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = -2

Query: 290 ADAERKKACMHDCTKANLDPICAGKTGEKPKSFGNECVMNNYNCEHKDTLRKISQ 126
           +D + ++AC  +C+   L   C      +P S G+  + N  NC   D   ++ Q
Sbjct: 724 SDQQSQQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFDETVEVHQ 778


>10_08_0797 + 20646091-20646519,20646531-20647460
          Length = 452

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 281 QHQPSPASGPACRDGTTPPRTTQRKHRK 364
           +H  +PA  PA      P +TT R+HRK
Sbjct: 115 EHSAAPAPAPA--PAPAPAKTTARRHRK 140


>11_08_0077 - 28180918-28183269,28183553-28184608
          Length = 1135

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 208 SPVFPAQIGSRLALVQSCMQAFLRSASAFT 297
           +P+F   IGSR+  + + + A  +SA+AF+
Sbjct: 114 NPLFAHDIGSRIKALNTRLDAICKSAAAFS 143


>07_01_0968 -
           8111340-8112067,8112496-8112566,8112663-8112837,
           8112991-8113054,8113351-8113671,8114413-8114438,
           8114495-8114573
          Length = 487

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 275 CAQHQPSPASGPACRDGTTPP 337
           C Q +PSP  G  C DG + P
Sbjct: 440 CEQLRPSPGPGQVCYDGNSYP 460


>05_03_0162 -
           9050981-9051003,9051141-9052273,9052388-9053310,
           9053560-9054615
          Length = 1044

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 208 SPVFPAQIGSRLALVQSCMQAFLRSASAFT 297
           +P+F   IGSR+  + + + A  +SA+AF+
Sbjct: 113 NPLFAHDIGSRIKALNARLDAICKSAAAFS 142


>02_03_0246 - 16807619-16808145,16808208-16808868
          Length = 395

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 263 CRPSCAQHQPSPASGPACRDGTTPPRTTQ 349
           CRP C   +   A+ P+    TTPP T +
Sbjct: 114 CRPPCCCGRRRRAASPSASPCTTPPATAR 142


>02_02_0631 -
           12397517-12398452,12398693-12398819,12398971-12399154,
           12399303-12399395,12400029-12400077,12400565-12400624,
           12400689-12400730,12400840-12400992,12401075-12401206,
           12401313-12401408,12401936-12402079,12402234-12402308,
           12403896-12404021
          Length = 738

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 231 YLRWKDRRETQVIRKRVCHEQLQLRTQRYVAQDQPRPVSWIRW 103
           YL   + R T  +RKR+ HE+ +   QR +  D    V W+ +
Sbjct: 39  YLFAVNERYTMRLRKRIQHEERKCANQRRLLSD-AETVRWLNY 80


>11_06_0577 - 25158833-25162864
          Length = 1343

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 34  MLLVPTINNVINYCFFSVQERRMPSDPGHWPWL 132
           M  V  I  V + C    +    P +PG WPWL
Sbjct: 63  MRQVRDIAYVADDCITLYRRDLTPPEPGFWPWL 95


>10_08_0262 +
           16307003-16308416,16309501-16309595,16309954-16309959,
           16310567-16310671
          Length = 539

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 234 PYLRWKDRRETQVIRKRVCHEQLQLRTQRYVAQDQPRPV-SWIRW 103
           P+L W  RRE + +++ + H + +  T R      P PV SW  W
Sbjct: 310 PFLEWLRRRECKDLKRTLVHGRWKATTWR-----MPIPVTSWDDW 349


>08_02_0682 + 20018879-20019226,20019324-20019656
          Length = 226

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 163 IANTKIRCARSAKASVL-DQMASVSLEH 83
           IAN   RCAR   AS+L D    VSLE+
Sbjct: 66  IANAAARCARLGGASLLSDDRCRVSLEY 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,007
Number of Sequences: 37544
Number of extensions: 242404
Number of successful extensions: 841
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)