Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N16
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     49   6e-07
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   6.1  
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual     26   6.1  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    25   8.0  

>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
 Frame = -3

Query: 674 REFK*IRPADPVSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQAQKRIK 504
           R+FK I  A  VS W+HLNN D G+ +F   I ++ ++   +I+EPQ W  Y +A K+I 
Sbjct: 145 RKFKIIL-ALSVSKWVHLNNHDEGIIKFFGKISSLLETNGVLILEPQGWDSYLKAAKKIS 203

Query: 503 KTGNTFQLYDNLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSY 357
               T    +NLKI  Q D F E +L +   +  Y  +    N + +++
Sbjct: 204 VFNQT---PENLKI--QPDAF-EHLLNQAGLVLEYSIEPQVNNSEYKNF 246


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 VRFY*KIISIPFFHLFEYL 352
           ++FY K IS+P FH+ E L
Sbjct: 218 IQFYEKSISLPMFHIAENL 236


>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 314 IISIPFFHLFEYLICNFVFFCSMKNFVIHIL 406
           I++I FF+ +   + NFVF  + K ++I+++
Sbjct: 74  IMNIYFFYQYSTYLENFVFARNAKKYIIYLV 104


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 515 KRIKKTGNTFQLYDNLKIRSQVDIFIESILK 423
           +R K   NT     N+K+ + VD F + ILK
Sbjct: 507 RRCKGIANTVGYLPNVKLGNTVDEFFDGILK 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,691
Number of Sequences: 5004
Number of extensions: 57220
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)