Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_N16
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 38 0.008
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 33 0.29
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 30 2.1
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419... 29 3.6
10_08_0383 - 17424194-17425567 29 4.8
02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452 29 4.8
05_03_0146 + 8883761-8883860,8886000-8886086,8886574-8886684,888... 28 8.4
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 28 8.4
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 37.9 bits (84), Expect = 0.008
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 641 VSMWIHLNNGDNGLREFLEHIKTISKS---IIIEPQPWKCYRQ 522
V+ WIHLN GD+G+ I + + I+EPQPW YR+
Sbjct: 207 VTKWIHLNWGDDGIITLFVKIWRLLRPGGVFIMEPQPWTSYRR 249
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 32.7 bits (71), Expect = 0.29
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = -3
Query: 626 HLNNGDNGLREFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTGNTFQLYDNLKI---RS 456
H + ++ L E HI+ +++ II+E + WK ++ R K F L++ LKI R
Sbjct: 305 HAPSVEHSLAEVAAHIEAVTEKIIMEEEKWKKWKTENIRRKHNYVPF-LFNFLKILEERQ 363
Query: 455 QVDIFIESILKEHTH 411
Q+ IE K+ +H
Sbjct: 364 QLKPLIEK-AKQKSH 377
>03_02_0919 - 12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/100 (23%), Positives = 47/100 (47%)
Frame = -3
Query: 674 REFK*IRPADPVSMWIHLNNGDNGLREFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTG 495
+EF+ R A ++W+ L G L F+ +I + PQP RQ I +
Sbjct: 800 QEFESARVASRDTLWVCLETGLRLLHPFMPYITEELWQHL--PQPKYSCRQDSIMISEYP 857
Query: 494 NTFQLYDNLKIRSQVDIFIESILKEHTHIKVYESQNSSWN 375
+ + + N + +++DI ++++ K + +K + S+N
Sbjct: 858 SLVEEWTNDNLENEMDIVLDTVNKIRS-LKTRTERKESYN 896
>05_01_0502 +
4191443-4191769,4191770-4191892,4194161-4194313,
4194420-4194505,4194648-4194732,4194871-4194990,
4195066-4195134,4195351-4195506
Length = 372
Score = 29.1 bits (62), Expect = 3.6
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = +2
Query: 329 FFHLFEYLICNFVFFCSMKNFVIHILLYVY 418
+F++F L+C ++FF NF++ + ++ +
Sbjct: 64 YFNIFNKLVCTYIFFPQFVNFLLLLDMFFF 93
>10_08_0383 - 17424194-17425567
Length = 457
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 167 NLTSPPRLSTSISGSGAFSILRVTCKSAIVLINIFA 60
N TSPP+ + G +L +T + A+ +IN+ A
Sbjct: 179 NETSPPKPAAGRDGGSELRLLDLTRRDAVAIINLLA 214
>02_03_0072 + 14761373-14761599,14761672-14761773,14762281-14762452
Length = 166
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 25 VKLIH*LHCHDYAKIFISTIADLQVTLNMLNAPEPEMEVES 147
+K+IH H H YAK+ IA + T++ML+ ++ + +
Sbjct: 117 IKIIH-PHMHTYAKLLHWKIASISSTISMLSLSTNKLSIHA 156
>05_03_0146 +
8883761-8883860,8886000-8886086,8886574-8886684,
8887021-8887121,8887208-8887258,8887347-8887496,
8887577-8887639,8887728-8887814,8887908-8888018,
8888097-8888387,8889372-8889815
Length = 531
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/62 (24%), Positives = 33/62 (53%)
Frame = -3
Query: 518 QKRIKKTGNTFQLYDNLKIRSQVDIFIESILKEHTHIKVYESQNSSWNRKIQSYKLNIQT 339
Q++I T +Q +D + + + + E E ++YES+N+ + R++ + +Q+
Sbjct: 173 QQQISTTERIYQEFDAIYNNNNMTTWSERS-SERDIKELYESKNNHFKRQVNGTTMAMQS 231
Query: 338 NE 333
NE
Sbjct: 232 NE 233
>03_05_0776 + 27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/84 (21%), Positives = 42/84 (50%)
Frame = -3
Query: 674 REFK*IRPADPVSMWIHLNNGDNGLREFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTG 495
+EF+ R A ++W+ L+ G L F+ ++ + PQP R+ + +
Sbjct: 865 QEFESARAASRDALWVCLDTGLRLLHPFMPYVTEELWQRL--PQPKDSCRKDSIMVSEYP 922
Query: 494 NTFQLYDNLKIRSQVDIFIESILK 423
+ + + + K+ +++DI +++I K
Sbjct: 923 SVVKEWTDDKLENEIDIALDTINK 946
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,729,538
Number of Sequences: 37544
Number of extensions: 285805
Number of successful extensions: 650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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