Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_N16
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-21|CAA19466.1| 381|Caenorhabditis elegans Hypothetical... 36 0.038
AL023828-20|CAA19465.1| 378|Caenorhabditis elegans Hypothetical... 36 0.038
AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical ... 28 7.5
AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical ... 28 7.5
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p... 27 9.9
Z81485-8|CAD36482.1| 171|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 27 9.9
U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective sperm... 27 9.9
U53340-4|AAA96209.2| 445|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ... 27 9.9
AF077542-4|AAU20829.1| 315|Caenorhabditis elegans Serpentine re... 27 9.9
>AL023828-21|CAA19466.1| 381|Caenorhabditis elegans Hypothetical
protein Y17G7B.18b protein.
Length = 381
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 641 VSMWIHLNNGDNGLREFLEHIKT---ISKSIIIEPQPWKCYRQAQK 513
++ WIHLN GD+G+R F +IIEPQ + Y++ K
Sbjct: 268 ITKWIHLNWGDDGMRRFFRRAYAQLHPGGRLIIEPQAFDSYKKRAK 313
>AL023828-20|CAA19465.1| 378|Caenorhabditis elegans Hypothetical
protein Y17G7B.18a protein.
Length = 378
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 641 VSMWIHLNNGDNGLREFLEHIKT---ISKSIIIEPQPWKCYRQAQK 513
++ WIHLN GD+G+R F +IIEPQ + Y++ K
Sbjct: 265 ITKWIHLNWGDDGMRRFFRRAYAQLHPGGRLIIEPQAFDSYKKRAK 310
>AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical
protein M70.3b protein.
Length = 886
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 599 REFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTGNTFQL 480
+EF +++ IS I P K R A IKK+ NT L
Sbjct: 532 QEFFTNLEEISSEIAGSSSPIKSIRDAIANIKKSNNTEDL 571
>AF047661-1|AAK71388.2| 915|Caenorhabditis elegans Hypothetical
protein M70.3a protein.
Length = 915
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 599 REFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTGNTFQL 480
+EF +++ IS I P K R A IKK+ NT L
Sbjct: 561 QEFFTNLEEISSEIAGSSSPIKSIRDAIANIKKSNNTEDL 600
>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/88 (17%), Positives = 40/88 (45%)
Frame = -3
Query: 656 RPADPVSMWIHLNNGDNGLREFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTGNTFQLY 477
R +P+ +++ N +++ +E ++ + K++I K +++ LY
Sbjct: 1185 RVCEPLKTQLNVRPRGNAVKQEVEKLEELKKAVIRVVYGLKL---KLPEVERNPQFLDLY 1241
Query: 476 DNLKIRSQVDIFIESILKEHTHIKVYES 393
+ +K +++ +LKE VY++
Sbjct: 1242 NTIKHTKELEALANDVLKESQRAVVYDT 1269
>Z81485-8|CAD36482.1| 171|Caenorhabditis elegans Hypothetical
protein C49F5.8 protein.
Length = 171
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -3
Query: 614 GDNGLREFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTGNTF-QLYDNL 468
GDNG+ + E K IS I++P+P +R A + +KK G F Q NL
Sbjct: 83 GDNGIIKLKE--KIIS---IVDPKPRIIHRYALEALKKPGTYFVQTKSNL 127
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 629 IHLNNGDNGLREFLEHIKTISK 564
+HLN D+G +EF H ISK
Sbjct: 80 VHLNKHDDGEQEFRSHAMAISK 101
>U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective
spermatogenesis protein39, isoform a protein.
Length = 522
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -3
Query: 530 YRQAQKRIKKTGNTFQLYDNLKIRSQVDIFIESILKEHTHIKVYESQNSS 381
YR + + + YDN I ++ IF+E LKE+ K+ + Q S+
Sbjct: 188 YRSLRDKTQLLKQAVATYDNNTI-FKIVIFLERTLKENIFCKIMDGQKSA 236
>U53340-4|AAA96209.2| 445|Caenorhabditis elegans Hypothetical
protein F02E8.2a protein.
Length = 445
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 406 FICVCSFKILSIKMST*LLILRLSYSWNVFPVFL 507
FI C F+IL + + + LSY+ N+FPV L
Sbjct: 263 FIIYCYFRILGTRHFL-CITVNLSYTSNIFPVTL 295
>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/88 (17%), Positives = 40/88 (45%)
Frame = -3
Query: 656 RPADPVSMWIHLNNGDNGLREFLEHIKTISKSIIIEPQPWKCYRQAQKRIKKTGNTFQLY 477
R +P+ +++ N +++ +E ++ + K++I K +++ LY
Sbjct: 1185 RVCEPLKTQLNVRPRGNAVKQEVEKLEELKKAVIRVVYGLKL---KLPEVERNPQFLDLY 1241
Query: 476 DNLKIRSQVDIFIESILKEHTHIKVYES 393
+ +K +++ +LKE VY++
Sbjct: 1242 NTIKHTKELEALANDVLKESQRAVVYDT 1269
>AF077542-4|AAU20829.1| 315|Caenorhabditis elegans Serpentine
receptor, class z protein63 protein.
Length = 315
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Frame = +2
Query: 341 FEYLICNFVFFCSM-----KNFVIHILLYVYALLKYFL 439
F + + NF+ FCS+ N V H+L+ + L+K+ +
Sbjct: 85 FYWKLLNFISFCSLFAFHINNTVFHVLIMMMTLVKFLV 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,107
Number of Sequences: 27780
Number of extensions: 308235
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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