Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N14
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.2  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 412 NYSELKSLLVHSCLKHFKKKND*NHLFIDKSHNLVTD 302
           N  EL+ ++++S  K F K ++ ++LF D++   +TD
Sbjct: 689 NDLELRGIVINSLCKLFTKFSNFDYLFEDRTVTFLTD 725


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 95  IDXLEDXRVEIDFFIHSNIKKKNFTSIRQSITI 193
           ID   D ++ +D  IHS++KK +F   +  I +
Sbjct: 217 IDITSDYQLNLDKVIHSSLKKLSFLIFKVCIRL 249


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 538 NLPKL-EEKKPNTTNESINC 482
           N PK  E K+P+ TNE +NC
Sbjct: 529 NEPKTGENKEPSQTNEYVNC 548


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 172  HTTINNNYSQSSSLHFKHSKLCKKWKL 252
            H TI   YS+S S++ K  +L +++KL
Sbjct: 3691 HETIRLAYSESQSINRKVDELIRRYKL 3717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,355
Number of Sequences: 5004
Number of extensions: 43756
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)