Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N14
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699     29   4.0  
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653...    28   5.3  
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209...    27   9.3  

>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
          Length = 240

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 178 SYGSKVFFFNIRMDEKVNFYPTILQXVDD 92
           +YG ++FF  +R D+K  + PT L  +DD
Sbjct: 163 AYGHRLFFAEVRKDKK-RYIPTCLWSLDD 190


>11_01_0780 -
           6531579-6531608,6531732-6532064,6533219-6533325,
           6534267-6534316,6535110-6537065,6537458-6538209
          Length = 1075

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 406 SELKSL-LVHSCLKHFKKKND*NHLFIDKSHNLVTDCYYC 290
           SE+ +L L H   KH       NH   DK  N+V  CY C
Sbjct: 359 SEVDNLELWHHVQKHLSSSMATNHTSEDKLRNIVRLCYRC 398


>06_03_0914 +
           25920277-25920405,25920783-25920810,25920890-25920990,
           25921356-25921479,25921793-25921903,25922222-25922397,
           25922766-25922848,25922935-25923007,25923630-25923695,
           25923776-25923818,25924600-25924739,25924878-25925090,
           25925397-25925481,25925558-25925852,25926855-25927110,
           25927237-25927450,25927701-25927912,25928054-25928203
          Length = 832

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 104 LEDXRVEIDFFIHSNIKKKNFTSIRQSITIILKVH 208
           L+   + +D+FIH    + NF  ++  + + LK+H
Sbjct: 751 LQSISLLLDYFIHELSCRNNFEFVQAVLKLFLKIH 785


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,597,600
Number of Sequences: 37544
Number of extensions: 200624
Number of successful extensions: 360
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)