Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N13
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    27   3.8  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   3.8  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   3.8  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.0  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   8.8  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 440 LMLIYVRLPSRLDVSSMYRDPRKDSCDSCRMTTP 541
           L+ IY RL   LD++ +YR  R  S  S   + P
Sbjct: 264 LVSIYSRLRECLDIAQLYRTSRIKSASSHNFSVP 297


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 218 NLANRSSYHEEAKEAALLNFYSNRRDRM-NSAPDKYYNELIKEINYARMXILRSSCEPAS 42
           N    S+YH   +E +   FY +R+ ++   + +K  N   K I   R  +++  CE A+
Sbjct: 138 NTFEHSAYHSNREEISSSGFYYHRKPQLFEKSLEKLGN---KSIEANRSPLIKELCESAN 194


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = -3

Query: 173 ALLNFYSNRRDRMNSAPDKYYNELIKEINYAR-----MXILRSSCEPAS 42
           A+++ Y  +    NSA D+YY E +++ +++R     + + +SS  PA+
Sbjct: 88  AIISRYETQGVARNSACDRYYQEALRKKSWSRSLSNNISLSQSSSSPAT 136


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -3

Query: 527 YTNHMSLFWDPDTCCLHP---NDLANEHKL 447
           YT+H+ L + P  C LHP   N L  +H+L
Sbjct: 266 YTDHIGLKFLPRLCELHPDAINSLDEKHQL 295


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 368 KSKYDDLRELNDAANETAIATAVNVYV-EKMEKATEFKGWWIPTLGIPYLVNLAN 207
           K  Y  LR   DA      A  +  Y  + +E+  E+K W I   G+P  + ++N
Sbjct: 430 KIPYLQLRVSPDAEEIGVDADQIGEYAFDYIEERREYKHWKISPAGVPEEIIISN 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,057
Number of Sequences: 5004
Number of extensions: 54910
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)