Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N13
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197...    31   1.3  
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149           29   3.0  
01_04_0005 - 15000085-15000363                                         29   3.0  
05_07_0277 - 28909502-28909621,28910053-28910583,28910629-289107...    29   4.0  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    29   4.0  
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104...    28   6.9  
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531...    28   9.2  

>07_03_0910 -
           22519006-22519159,22519300-22519355,22519433-22519702,
           22519808-22519986,22520146-22520374,22520985-22521180,
           22521728-22521818,22521921-22521975,22522812-22522902,
           22523366-22523424,22524000-22524050
          Length = 476

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 476 PNDLANEHKLASEQALKLFHPELPDEMEREILKQFIKSKYDDLR 345
           P  +A    + +E++   +  ELP   +R  ++ FI++KY+D R
Sbjct: 78  PEQVAFIQSMGNEKSNSYWEAELPPNYDRVGIENFIRAKYEDKR 121


>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
          Length = 297

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 578 AINRSKNRKQFMMALSFYTN-HMSLFWDPDTCCLHPNDLANEHKLASEQAL 429
           A  + K  K+ + AL+ Y N H  L  D D  C HP D++ +   A + A+
Sbjct: 5   ASTKVKKFKKNVAALTSYGNPHARLINDVDEACNHPGDVSGDVAKAFDSAV 55


>01_04_0005 - 15000085-15000363
          Length = 92

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 605 MAAQFINLQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCL 480
           M  + I +  I RS+N     +A    TN  S+FW  ++C L
Sbjct: 39  MGGRDIRVSKIQRSQNNVSHFLANRGRTNSCSVFWPDESCNL 80


>05_07_0277 -
           28909502-28909621,28910053-28910583,28910629-28910721,
           28910758-28911501
          Length = 495

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = -3

Query: 452 KLASEQALKLFHPELPDEMEREILKQFIKSKYDDLRE--LNDAANETAIATAVNVYVEKM 279
           +LA  Q L  +   +  E     LK   K K  + ++  LND  +  +++   N YVE  
Sbjct: 218 RLAKLQVLSAYIIGVTHESSISELKPLKKLKVQEAKDAILNDKHDLVSLSYQWNTYVENA 277

Query: 278 EKATEFKGWWIP---TLGIPYLVNLANRSSYHEEA 183
           E+   + G  +P   T   PYL +L +   ++ +A
Sbjct: 278 EQIISYPGAKLPQWMTWREPYLKSLLHIKLFNMKA 312


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -3

Query: 698 SYRKAIETFDQRRNRPTEFPEDVFKLSLMQHMAAQFINLQAINRSKNRKQFMMAL 534
           S+   +   D    + +E P  V+KL L++++ A  + + + ++S N    + AL
Sbjct: 530 SHTLCLRVLDLGGRQVSELPSSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQAL 584


>02_04_0013 -
           18910009-18910056,18910154-18910282,18910373-18910420,
           18910532-18910594,18910675-18910713,18912107-18912180,
           18913014-18913072,18913265-18913324,18913466-18913590,
           18914054-18914112,18914356-18914419,18914516-18914569,
           18914727-18914765,18916135-18916275
          Length = 333

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = -3

Query: 410 LPDEMEREILKQFIKSKY-DDLRELNDA--ANETAIATAVNVYVEKMEKATEFKGWWIPT 240
           LP++ ERE +K+F+K K  +  REL  A  A + AI        E  E    +K + + T
Sbjct: 250 LPED-EREKMKEFLKEKVRERKRELKQAKEARKKAIDDMDPKIKEAFENIQFYKFYPVKT 308

Query: 239 LGIPYLVNLANR 204
           L  P + N+  R
Sbjct: 309 LDTPDVSNVKAR 320


>02_05_0761 -
           31550936-31551020,31551641-31552666,31553083-31553117,
           31554921-31555039,31555215-31555331,31556131-31556205,
           31556885-31557017
          Length = 529

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 371 IKSKYDDLRELNDAANETAIATAVNVYVEKMEKATE--FKGWWIP 243
           +K + DDL+  ND  ++ A  T  N  +++  K  +  F  W +P
Sbjct: 414 VKQRNDDLKISNDGLDDNADVTCSNSNIDEYHKTQQEYFVPWHLP 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,291
Number of Sequences: 37544
Number of extensions: 330140
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)