Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N13
         (754 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC010708-1|AAH10708.2|  558|Homo sapiens spastic paraplegia 3A (...    33   1.1  
AY032844-1|AAK51160.1|  475|Homo sapiens GTPase protein.               33   1.1  
AK223436-1|BAD97156.1|  558|Homo sapiens atlastin variant protein.     33   1.1  
AF444143-1|AAL37898.1|  558|Homo sapiens brain-specific GTP-bind...    33   1.1  
AF131801-1|AAD20047.1|  475|Homo sapiens Unknown protein.              33   1.1  
M92357-1|AAA35582.1|  654|Homo sapiens B94 protein protein.            31   3.4  
BC128449-1|AAI28450.1|  431|Homo sapiens TNFAIP2 protein protein.      31   3.4  
AY273786-1|AAP12649.1|  655|Homo sapiens tumor necrosis factor, ...    31   3.4  
CR457153-1|CAG33434.1|  475|Homo sapiens SPG3A protein.                30   7.8  

>BC010708-1|AAH10708.2|  558|Homo sapiens spastic paraplegia 3A
           (autosomal dominant) protein.
          Length = 558

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 584 LQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELP 405
           LQA   + N      A   Y   M      D   L PNDL  +H    E+++KLF     
Sbjct: 348 LQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKK 407

Query: 404 ---DEMEREILKQFIKSKYDDL 348
              +E  R  L+Q ++S+ D+L
Sbjct: 408 MGGEEFSRRYLQQ-LESEIDEL 428


>AY032844-1|AAK51160.1|  475|Homo sapiens GTPase protein.
          Length = 475

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 584 LQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELP 405
           LQA   + N      A   Y   M      D   L PNDL  +H    E+++KLF     
Sbjct: 265 LQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKK 324

Query: 404 ---DEMEREILKQFIKSKYDDL 348
              +E  R  L+Q ++S+ D+L
Sbjct: 325 MGGEEFSRRYLQQ-LESEIDEL 345


>AK223436-1|BAD97156.1|  558|Homo sapiens atlastin variant protein.
          Length = 558

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 584 LQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELP 405
           LQA   + N      A   Y   M      D   L PNDL  +H    E+++KLF     
Sbjct: 348 LQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKK 407

Query: 404 ---DEMEREILKQFIKSKYDDL 348
              +E  R  L+Q ++S+ D+L
Sbjct: 408 MGGEEFSRRYLQQ-LESEIDEL 428


>AF444143-1|AAL37898.1|  558|Homo sapiens brain-specific GTP-binding
           protein protein.
          Length = 558

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 584 LQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELP 405
           LQA   + N      A   Y   M      D   L PNDL  +H    E+++KLF     
Sbjct: 348 LQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKK 407

Query: 404 ---DEMEREILKQFIKSKYDDL 348
              +E  R  L+Q ++S+ D+L
Sbjct: 408 MGGEEFSRRYLQQ-LESEIDEL 428


>AF131801-1|AAD20047.1|  475|Homo sapiens Unknown protein.
          Length = 475

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = -3

Query: 584 LQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELP 405
           LQA   + N      A   Y   M      D   L PNDL  +H    E+++KLF     
Sbjct: 265 LQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKK 324

Query: 404 ---DEMEREILKQFIKSKYDDL 348
              +E  R  L+Q ++S+ D+L
Sbjct: 325 MGGEEFSRRYLQQ-LESEIDEL 345


>M92357-1|AAA35582.1|  654|Homo sapiens B94 protein protein.
          Length = 654

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -3

Query: 518 HMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELPDEMEREILKQFIKSKYDDLREL 339
           +M L W  +   L+PND+ N  KL  E         LP    R +   F+ S+  ++REL
Sbjct: 275 YMLLLWVEN---LYPNDIINSPKLVGELQGMGLGSLLPPRQIRLLEATFLSSEAANVREL 331

Query: 338 NDAANE 321
            D A E
Sbjct: 332 MDRALE 337


>BC128449-1|AAI28450.1|  431|Homo sapiens TNFAIP2 protein protein.
          Length = 431

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -3

Query: 518 HMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELPDEMEREILKQFIKSKYDDLREL 339
           +M L W  +   L+PND+ N  KL  E         LP    R +   F+ S+  ++REL
Sbjct: 52  YMLLLWVEN---LYPNDIINSPKLVGELQGMGLGSLLPPRQIRLLEATFLSSEAANVREL 108

Query: 338 NDAANE 321
            D A E
Sbjct: 109 MDRALE 114


>AY273786-1|AAP12649.1|  655|Homo sapiens tumor necrosis factor,
           alpha-induced protein 2 protein.
          Length = 655

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 22/66 (33%), Positives = 31/66 (46%)
 Frame = -3

Query: 518 HMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELPDEMEREILKQFIKSKYDDLREL 339
           +M L W  +   L+PND+ N  KL  E         LP    R +   F+ S+  ++REL
Sbjct: 276 YMLLLWVEN---LYPNDIINSPKLVGELQGMGLGSLLPPRQIRLLEATFLSSEAANVREL 332

Query: 338 NDAANE 321
            D A E
Sbjct: 333 MDRALE 338


>CR457153-1|CAG33434.1|  475|Homo sapiens SPG3A protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -3

Query: 584 LQAINRSKNRKQFMMALSFYTNHMSLFWDPDTCCLHPNDLANEHKLASEQALKLFHPELP 405
           LQA   + N      A   Y   M      D   L PN L  +H    E+++KLF     
Sbjct: 265 LQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNGLQTKHLQLKEESVKLFRGVKK 324

Query: 404 ---DEMEREILKQFIKSKYDDL 348
              +E  R  L+Q ++S+ D+L
Sbjct: 325 MGGEEFSRRYLQQ-LESEIDEL 345


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,800,313
Number of Sequences: 237096
Number of extensions: 1868735
Number of successful extensions: 4507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4504
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)