Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N13
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-7|CAB01652.1|  495|Caenorhabditis elegans Hypothetical pr...    33   0.29 
L03524-1|AAA28152.1|  495|Caenorhabditis elegans protein-tyrosin...    33   0.29 
AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical...    32   0.38 
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    29   2.7  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    29   3.5  
AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical ...    29   3.5  

>Z78412-7|CAB01652.1|  495|Caenorhabditis elegans Hypothetical
           protein M176.7 protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 233 IPYLVNLANRSSYHEEAKEAALLNFYSNRRDRMNSAPDKYYNELIKE 93
           I +LV    RS   E+ K  AL+N YS+ RD  ++ P++  N  + +
Sbjct: 76  IAFLVWRLRRSKTQEKRKNMALMNIYSDLRDTGDAMPEELKNRPLND 122


>L03524-1|AAA28152.1|  495|Caenorhabditis elegans protein-tyrosine
           kinase protein.
          Length = 495

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 233 IPYLVNLANRSSYHEEAKEAALLNFYSNRRDRMNSAPDKYYNELIKE 93
           I +LV    RS   E+ K  AL+N YS+ RD  ++ P++  N  + +
Sbjct: 76  IAFLVWRLRRSKTQEKRKNMALMNIYSDLRDTGDAMPEELKNRPLND 122


>AL132876-17|CAC48140.1|  934|Caenorhabditis elegans Hypothetical
           protein Y105E8A.21 protein.
          Length = 934

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 641 PEDVFKLSLMQHMAAQFINLQAINRSKNRKQFMMALSFYTNHMSLFWDPDTC 486
           P+D  KLS     A Q   L A+ ++K   + ++    YTNHMS+ +  D C
Sbjct: 192 PDDFRKLS---KKAKQAYTLDAVTKNKGIVKCLVCDKEYTNHMSIIYHIDRC 240


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 427 NYFTPNCQMRWREKYLNSSSSRSMTICA 344
           N +  +C++RW  K+L  +  ++ T+CA
Sbjct: 195 NPWNCDCRLRWMRKWLEKAEGQNKTVCA 222


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 427 NYFTPNCQMRWREKYLNSSSSRSMTICA 344
           N +  +C++RW  K+L  +  ++ T+CA
Sbjct: 195 NPWNCDCRLRWMRKWLEKAEGQNKTVCA 222


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 276 LHFFYIHV-NSCSNSCFIRSIVQFAQIVIL-RLDELFKYFSLHLIWQ 410
           LH F  HV NSC N  F     ++  I+IL  L +LF  +   L  Q
Sbjct: 151 LHMFMYHVSNSCVNFSFYGIFCKYLTIIILILLIDLFSIYKARLFLQ 197


>AC006693-7|AAF60385.1|  201|Caenorhabditis elegans Hypothetical
           protein W02H5.2 protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 497 PDTCCLHPNDLANEHKLASEQALKLFHPELPDEMEREILKQFIKSKYDDLRELNDAANE 321
           P TC ++ N+LA+  K    Q L  F+ +L + +E        +  ++ L+EL +  NE
Sbjct: 124 PHTCAINKNELAHIVKFDLAQKLHEFYGQLDESLEDR------EESHEILQELQELGNE 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,741
Number of Sequences: 27780
Number of extensions: 305829
Number of successful extensions: 927
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)