Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_N09
(319 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical ... 115 6e-27
Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical pr... 33 0.034
U42839-6|ABD63236.1| 88|Caenorhabditis elegans Hypothetical pr... 33 0.059
U42839-5|AAM54196.1| 133|Caenorhabditis elegans Hypothetical pr... 33 0.059
U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical pr... 31 0.14
U41559-8|AAM81108.1| 167|Caenorhabditis elegans Nuclear hormone... 31 0.24
Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical pr... 30 0.31
U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone... 30 0.41
AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear recep... 30 0.41
AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear recep... 30 0.41
AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear recep... 30 0.41
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 0.55
U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical pr... 29 0.73
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 29 0.96
U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone... 29 0.96
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 29 0.96
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 29 0.96
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 29 0.96
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 1.3
L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease pr... 28 1.3
AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered cut... 28 1.3
Z81064-7|CAB02960.2| 382|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 27 2.2
U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical pr... 27 2.2
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 27 2.2
AL031621-7|CAE46665.1| 382|Caenorhabditis elegans Hypothetical ... 27 2.2
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 27 3.9
U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical pr... 26 5.1
AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical... 26 6.8
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 25 8.9
Z81041-12|CAE17708.2| 81|Caenorhabditis elegans Hypothetical p... 25 8.9
Z75532-3|CAA99810.1| 660|Caenorhabditis elegans Hypothetical pr... 25 8.9
Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical pr... 25 8.9
AF083230-1|AAD03688.1| 115|Caenorhabditis elegans nuclear recep... 25 8.9
AF067622-5|AAC17544.1| 371|Caenorhabditis elegans Nuclear hormo... 25 8.9
AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1 ... 25 8.9
>AL110490-2|CAB54440.1| 91|Caenorhabditis elegans Hypothetical
protein Y48B6A.2 protein.
Length = 91
Score = 115 bits (277), Expect = 6e-27
Identities = 48/64 (75%), Positives = 55/64 (85%)
Frame = -1
Query: 268 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 89
MAKRTKKVGI GKYGTRYGASLRKM KK+EV QH++YTCSFCGK+AMKR GIW+C +C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKC 60
Query: 88 KRTV 77
+ V
Sbjct: 61 HKVV 64
>Z66524-1|CAA91420.2| 500|Caenorhabditis elegans Hypothetical
protein T13H5.4 protein.
Length = 500
Score = 33.5 bits (73), Expect = 0.034
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -3
Query: 311 LLFSVNFCIGEVYQNGQTYQKGWNYWQIWHTLRCLST*NGQKDGSNPTRKVYLLILW 141
L +S C + Y+ + +QK +N W+ H +RCL N +N T+ L LW
Sbjct: 403 LSYSCEICGNQTYKGPKAFQKHFNEWRHSHGMRCLGIPN-TSHFANITKIKDALDLW 458
>U42839-6|ABD63236.1| 88|Caenorhabditis elegans Hypothetical
protein F11C7.6b protein.
Length = 88
Score = 32.7 bits (71), Expect = 0.059
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKR--CK-RTVDRRSLGILHYCCLIMQI-CCXGGYVK 2
C +CGK R+C + C C +++ +S G C + CC G Y+K
Sbjct: 3 CGYCGKQNRTRTCEPVAGCAEPICSGDSIEIQSCGTSDNICFYPTVSCCNGAYIK 57
>U42839-5|AAM54196.1| 133|Caenorhabditis elegans Hypothetical
protein F11C7.6a protein.
Length = 133
Score = 32.7 bits (71), Expect = 0.059
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKR--CK-RTVDRRSLGILHYCCLIMQI-CCXGGYVK 2
C +CGK R+C + C C +++ +S G C + CC G Y+K
Sbjct: 48 CGYCGKQNRTRTCEPVAGCAEPICSGDSIEIQSCGTSDNICFYPTVSCCNGAYIK 102
>U97003-6|AAB52273.1| 402|Caenorhabditis elegans Hypothetical
protein F47C10.8 protein.
Length = 402
Score = 31.5 bits (68), Expect = 0.14
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 184 MEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
ME++ C+ CG+DA + G+ SC CK R + L Y C +C
Sbjct: 59 MELSTSNAPKCTICGRDASCHN-YGVLSCNACKMFFRRVVIEQLTYHCKKWNMC 111
>U41559-8|AAM81108.1| 167|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform b protein.
Length = 167
Score = 30.7 bits (66), Expect = 0.24
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Frame = -1
Query: 283 ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVT----QHAKYTCSFCGKDAMKRSC 116
ER M + G T G +R K+ V+ Q+ C+ CG D + +
Sbjct: 35 ERVPMMRGDLRTSGATSSSGPATSYIIRPSDKQPTVSSGGSQNGDSVCAVCG-DGIAKLH 93
Query: 115 VGIWSCKRCKRTVDRRSLGILHYCCLIMQICCXGGY 8
G+ +C CK R G Y C C Y
Sbjct: 94 YGVLACYGCKGFFRRTLTGKYRYACRFSNNCIVDKY 129
>Z83233-1|CAB05760.3| 371|Caenorhabditis elegans Hypothetical
protein K06B4.1 protein.
Length = 371
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
C C + A + G+ SC CK R + LHYCC C
Sbjct: 5 CLICHRKAAGQH-YGVLSCFACKMFFHRMVVENLHYCCQKFNKC 47
>U41559-6|AAC24263.1| 583|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform a protein.
Length = 583
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Frame = -1
Query: 283 ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVT----QHAKYTCSFCGKDAMKRSC 116
ER M + G T G +R K+ V+ Q+ C+ CG D + +
Sbjct: 35 ERVPMMRGDLRTSGATSSSGPATSYIIRPSDKQPTVSSGGSQNGDSVCAVCG-DGIAKLH 93
Query: 115 VGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
G+ +C CK R G Y C C
Sbjct: 94 YGVLACYGCKGFFRRTLTGKYRYACRFSNNC 124
>AF273779-1|AAG15128.1| 565|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 565
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Frame = -1
Query: 283 ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVT----QHAKYTCSFCGKDAMKRSC 116
ER M + G T G +R K+ V+ Q+ C+ CG D + +
Sbjct: 17 ERVPMMRGDLRTSGATSSSGPATSYIIRPSDKQPTVSSGGSQNGDSVCAVCG-DGIAKLH 75
Query: 115 VGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
G+ +C CK R G Y C C
Sbjct: 76 YGVLACYGCKGFFRRTLTGKYRYACRFSNNC 106
>AF273778-1|AAG15127.1| 595|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 595
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Frame = -1
Query: 283 ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVT----QHAKYTCSFCGKDAMKRSC 116
ER M + G T G +R K+ V+ Q+ C+ CG D + +
Sbjct: 47 ERVPMMRGDLRTSGATSSSGPATSYIIRPSDKQPTVSSGGSQNGDSVCAVCG-DGIAKLH 105
Query: 115 VGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
G+ +C CK R G Y C C
Sbjct: 106 YGVLACYGCKGFFRRTLTGKYRYACRFSNNC 136
>AF273776-1|AAG15125.1| 583|Caenorhabditis elegans nuclear receptor
NHR-31 protein.
Length = 583
Score = 29.9 bits (64), Expect = 0.41
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Frame = -1
Query: 283 ERFTKMAKRTKKVGITGKYGTRYGASLRKMVKKMEVT----QHAKYTCSFCGKDAMKRSC 116
ER M + G T G +R K+ V+ Q+ C+ CG D + +
Sbjct: 35 ERVPMMRGDLRTSGATSSSGPATSYIIRPSDKQPTVSSGGSQNGDSVCAVCG-DGIAKLH 93
Query: 115 VGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
G+ +C CK R G Y C C
Sbjct: 94 YGVLACYGCKGFFRRTLTGKYRYACRFSNNC 124
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 29.5 bits (63), Expect = 0.55
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = -1
Query: 157 TCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQICCXG 14
TC CG++ KR C+ + C S+ C CC G
Sbjct: 1119 TCGSCGQETRKRKCLSLQYGCACTGNATDTSVCASSVCLFPRTSCCTG 1166
>U97003-4|AAB52268.2| 370|Caenorhabditis elegans Hypothetical
protein F47C10.3 protein.
Length = 370
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQICCXG 14
C+ CGK A + G+ SC CK R + + Y C C G
Sbjct: 32 CAVCGKPAFCYN-YGVLSCNACKMFFRRVEVDHITYNCKYWNTCYDG 77
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
C CG D G+ SC+ CK R + Y CL Q+C
Sbjct: 151 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 193
>U41559-7|AAV34794.1| 544|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 31, isoform c protein.
Length = 544
Score = 28.7 bits (61), Expect = 0.96
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -1
Query: 175 TQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
+Q+ C+ CG D + + G+ +C CK R G Y C C
Sbjct: 36 SQNGDSVCAVCG-DGIAKLHYGVLACYGCKGFFRRTLTGKYRYACRFSNNC 85
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
C CG D G+ SC+ CK R + Y CL Q+C
Sbjct: 151 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 193
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
C CG D G+ SC+ CK R + Y CL Q+C
Sbjct: 148 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 190
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
C CG D G+ SC+ CK R + Y CL Q+C
Sbjct: 151 CKVCG-DKASGYHYGVTSCEGCKGFFRRSIQRKIDYRCLKQQVC 193
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 172 QHAKYTCSFCGKDAMKRSCVGIWSCKRC 89
++ KY C+ C R G+WSCK C
Sbjct: 229 ENNKYECAICYTRITTRQ--GVWSCKTC 254
>L29440-1|AAA98752.1| 570|Caenorhabditis elegans endoprotease
protein.
Length = 570
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCC 41
C C + G SC++C + + S+G CC
Sbjct: 434 CDLCDSSCETCTAPGPMSCEKCSKGYGKGSIGYCRPCC 471
>AF039719-1|AAB96754.1| 942|Caenorhabditis elegans Blistered
cuticle protein 4, isoformd protein.
Length = 942
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCC 41
C C + G SC++C + + S+G CC
Sbjct: 806 CDLCDSSCETCTAPGPMSCEKCSKGYGKGSIGYCRPCC 843
>Z81064-7|CAB02960.2| 382|Caenorhabditis elegans Hypothetical
protein F16B12.8 protein.
Length = 382
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 157 TCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
TC C K A R G++SC CK R + L Y C + C
Sbjct: 22 TCMICPKKASGRH-YGVFSCCACKMFFRRVIVENLFYKCKQNKTC 65
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -1
Query: 187 KMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCC 41
K E+ C C + A + G+ SC CK R S+ L Y C
Sbjct: 7 KSELALEVPKLCEICNRQAFGKH-YGVLSCYACKMFFRRMSVQKLVYNC 54
>U97549-9|AAB52849.2| 472|Caenorhabditis elegans Hypothetical
protein F15A8.7 protein.
Length = 472
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 23 ADLHDEAAVVENTQAPPVYSPLASLTRPDADTR 121
A L++E + P Y P+A++TR + DTR
Sbjct: 159 AHLNEEQVKLVYADNPTSYLPIANMTREERDTR 191
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 12 PPXQQICMMRQQ*WRIPKLLLSTVLLHRLQDQMPTQERFIASLPQNEQV 158
PP QQI + +Q+ + H+ Q Q P + +A PQN Q+
Sbjct: 730 PPQQQIRIQQQEPQMLQGQTNGPPPPHQQQQQQPVRVAQVAQQPQNMQI 778
>AL031621-7|CAE46665.1| 382|Caenorhabditis elegans Hypothetical
protein F16B12.8 protein.
Length = 382
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -1
Query: 157 TCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQIC 23
TC C K A R G++SC CK R + L Y C + C
Sbjct: 22 TCMICPKKASGRH-YGVFSCCACKMFFRRVIVENLFYKCKQNKTC 65
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 205 LRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQ 29
LR+ + ++ H Y C+ CG + + CK C+ ++ I + C L+ Q
Sbjct: 1109 LRERLFEVSDPYHV-YVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQ 1166
>U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical
protein C48C5.3 protein.
Length = 326
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 152 LILW*GCYE-TFLCRHLVL*AMQEDCRQ 72
+ +W GC+ F+C +L ++DCRQ
Sbjct: 150 VFVWFGCFVFVFICWYLECFTCEDDCRQ 177
>AL032639-10|CAA21634.1| 108|Caenorhabditis elegans Hypothetical
protein Y38F1A.9 protein.
Length = 108
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 226 GTRYGASLRKMVKKMEVTQHAK 161
G RY + ++KMV K VT H K
Sbjct: 46 GDRYVSKIKKMVGKFTVTLHIK 67
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 103 SCKRCKRTVDRRSLGILHYCCLIMQICCXGG 11
S KRC + G +H CC ++ C G
Sbjct: 481 SAKRCPSNYECVYTGTMHACCPSRELTCNQG 511
>Z81041-12|CAE17708.2| 81|Caenorhabditis elegans Hypothetical
protein C27A7.8 protein.
Length = 81
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/48 (25%), Positives = 16/48 (33%)
Frame = -1
Query: 157 TCSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQICCXG 14
TC CG R+C G + C + + C CC G
Sbjct: 22 TCGNCGTQQRTRTCTGASTTCTCSGDSSAQQVCAPAICRFPRTACCTG 69
>Z75532-3|CAA99810.1| 660|Caenorhabditis elegans Hypothetical
protein C54G10.3 protein.
Length = 660
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 151 SFCGKDAMKRSCVGIWSCKRCKRTVDRRSL 62
S CGK ++ R G+W C K R L
Sbjct: 459 SGCGKSSLLRMFAGLWHCSSGKMDCHWRRL 488
>Z71266-9|CAD24483.1| 489|Caenorhabditis elegans Hypothetical
protein R06C7.3 protein.
Length = 489
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 299 VNFCIGEVYQNGQTYQKGWNYWQIW 225
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
>AF083230-1|AAD03688.1| 115|Caenorhabditis elegans nuclear receptor
NHR-15 protein.
Length = 115
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQICCXG 14
C+ CG A + G+ SC CK R + + Y C C G
Sbjct: 33 CAICGNLAFCYN-YGVLSCNACKMFFRRVEVDRITYHCKYWDRCYDG 78
>AF067622-5|AAC17544.1| 371|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 15 protein.
Length = 371
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -1
Query: 154 CSFCGKDAMKRSCVGIWSCKRCKRTVDRRSLGILHYCCLIMQICCXG 14
C+ CG A + G+ SC CK R + + Y C C G
Sbjct: 33 CAICGNLAFCYN-YGVLSCNACKMFFRRVEVDRITYHCKYWDRCYDG 78
>AB040992-1|BAB21560.1| 489|Caenorhabditis elegans CeCRMP/DHP-1
protein.
Length = 489
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 299 VNFCIGEVYQNGQTYQKGWNYWQIW 225
++FC + ++NG++ G+N W+ W
Sbjct: 93 IDFCCPD-HRNGESLIAGYNRWRSW 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,794,980
Number of Sequences: 27780
Number of extensions: 162800
Number of successful extensions: 569
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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