Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N08
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   0.93 
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   0.93 
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   2.1  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   3.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   3.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    23   8.7  

>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 154 YKRLTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 270
           Y   T N TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 154 YKRLTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 270
           Y   T N TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 163 LTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTYRKAFSF 288
           +T     K + +G   ++  +F+ D N+ F+N+ TY    SF
Sbjct: 190 MTIKMLEKRFKKG-EYTTLESFVKDLNQMFINAKTYNAPGSF 230


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 163 LTYNCTHKYYGEGVSCSSFSAFLVDFNERFLNS-LTYRKAFS 285
           + Y C +K+Y    + +  S++L++    FL++ L + ++F+
Sbjct: 26  INYTCDNKFYSSPSTFALLSSYLIEKRLNFLHAFLPHCRSFA 67


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 121 KRRRCHSF*RSFPPLDINYFNNNNTADHEVFIEDPI 14
           +RR+ ++  R++PP +     N+N  D   F ED +
Sbjct: 110 RRRKTNNDRRNYPPQNRTAKPNDNDGDDYSFFEDDL 145


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 91   SFPPLDINYFNNNN 50
            SF  LDINY+ NN+
Sbjct: 1314 SFSQLDINYYINNS 1327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,072,732
Number of Sequences: 5004
Number of extensions: 16561
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)