Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N08
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0012 - 7346282-7347136,7347234-7347593                           29   1.1  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   1.9  
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869     27   2.5  
01_06_0824 - 32243495-32244319,32244449-32244859                       27   4.3  
11_02_0011 - 7337618-7338496,7338596-7338991                           26   7.6  

>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -2

Query: 186 FMSAVVSQPLVFKANHPFVFFL---KGDGVTLFNGVFHP 79
           F+   ++ P+ F A+HPF FF+   K D V     V  P
Sbjct: 362 FLCLTLTSPVDFVADHPFAFFVVEEKSDAVLFAGHVLDP 400


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -2

Query: 288 KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXAVVFMSAVVSQPLVFKANHPFVFFLKGD- 112
           +G++L VS    K                   +   SA +++  V  A+HPF+F ++ D 
Sbjct: 394 EGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSAPIAEDFV--ADHPFLFLIQEDM 451

Query: 111 -GVTLFNG 91
            GV LF G
Sbjct: 452 TGVVLFVG 459



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -2

Query: 189 VFMSAVVSQP--LVFKANHPFVFFLKGD--GVTLFNG 91
           V +S   S+P  L F A+HPF+F ++ D  GV LF G
Sbjct: 674 VMVSMEHSRPRRLNFVADHPFMFLIREDVTGVILFIG 710


>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
          Length = 258

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -2

Query: 192 VVFMSAVVSQPLVFKANHPFVFFLKGD--GVTLFNG 91
           V F SA V+  + F A+HPF+F ++ D  GV LF G
Sbjct: 218 VSFRSAPVT--VDFVADHPFLFLIREDMTGVVLFIG 251


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = -2

Query: 153 FKANHPFVFFLKGD--GVTLFNG 91
           F A+HPF+F +K D  GV +F G
Sbjct: 380 FVADHPFMFLIKEDLTGVVVFAG 402


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 171 VSQPLVFKANHPFVFFL--KGDGVTLFNG 91
           +S P  F A+HPF FF+  +  G  LF G
Sbjct: 386 MSYPEDFVADHPFAFFVVEETSGAVLFAG 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,486,334
Number of Sequences: 37544
Number of extensions: 92703
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)