Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N06
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    26   5.2  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    25   6.9  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   6.9  

>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -1

Query: 359 PILATHKRPAGCSLSKSTYLSHSKGNKSILLIY*VGNISLSNHVVRNFVGDW 204
           P++   K    C+    TYLS++    S   I  +G+  L++  + N +G W
Sbjct: 119 PVVRHSKLKPLCTEELYTYLSNNSHVSSASQILFIGDRLLTDITLANIMGSW 170


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 401 EDISKIFSKIRCDQPILATH-KRPAGCSLSKSTYLSHSKGNKSILLIY*VGNISLSNHVV 225
           ED+ KIF       PIL  H KR     L+ S + S SK N    ++   G + + +   
Sbjct: 204 EDLKKIFRSSSFFYPILMEHIKRCTSLDLTNSVF-SLSKVNTDCAILTSSGKLKIFSK-A 261

Query: 224 RNFVGDWL 201
           +N V D L
Sbjct: 262 QNIVFDVL 269


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 403 EKIFLRYSARYDVINQYWRRINVQQGVLY 317
           EK+ LR+    D I   W   + Q G LY
Sbjct: 88  EKLHLRFDVNKDSITIMWDNPDFQDGTLY 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,780
Number of Sequences: 5004
Number of extensions: 51455
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)