Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N03
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.81 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   1.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   1.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.7  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 83  NSNQVNYKRFYCTG*HKAYH 142
           N N  NYK+ YC    K Y+
Sbjct: 90  NYNNNNYKKLYCNNYRKLYY 109



 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 143 HDKLYVTLYSKIFYNL 96
           + KLY   Y K++YN+
Sbjct: 96  YKKLYCNNYRKLYYNI 111


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 83  NSNQVNYKRFYCTG*HKAYH 142
           N N  NYK+ YC    K Y+
Sbjct: 90  NYNNNNYKKLYCNNYKKLYY 109



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 143 HDKLYVTLYSKIFYNL 96
           + KLY   Y K++YN+
Sbjct: 96  YKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 83  NSNQVNYKRFYCTG*HKAYH 142
           N N  NYK+ YC    K Y+
Sbjct: 90  NYNNNNYKKLYCNNYKKLYY 109



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 143 HDKLYVTLYSKIFYNL 96
           + KLY   Y K++YN+
Sbjct: 96  YKKLYCNNYKKLYYNI 111


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 245 IFFK--KQFCDCFLKSGTIVIHDRIHVHVSTLRIT*HDKLYVTLYSK 111
           IFF   +  C   LK   +  HD+  V +S L +    K  +TL SK
Sbjct: 421 IFFAGYQAICKPKLKIADLSAHDKQAVRMSALNVQPTSKGRITLNSK 467


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 215 FLKSGTIVIHDRIH 174
           F++SG +VIH R H
Sbjct: 185 FIQSGQLVIHMRTH 198


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 315 FINKNVLRRVLNKLNPFLFISH*WCNLKLSTSDFKYIFIYNYSSPFTAIKAPCNEHSQN 491
           F +KN+    L  + P+   +  W  L    +  K IFI++  +   A+       SQN
Sbjct: 135 FSDKNIHVSFLRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSDTDGRALLGRFQTTSQN 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,694
Number of Sequences: 438
Number of extensions: 4776
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)