Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N01
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    29   0.96 
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    27   3.9  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    27   3.9  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    25   9.0  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.0  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 713 TSIYFLFNDNNIQLIQLKFMNCYMCNS-KNLKFFVS 609
           TS +F+ ++N + L+Q   +N Y+C+    L+FF S
Sbjct: 17  TSCHFISSENCLVLLQALKINIYLCSEVHGLQFFTS 52


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 97  KPMHTQLIYKLHILYY*W 150
           K +HT LI K HI+Y+ W
Sbjct: 352 KKLHTVLIQKHHIVYFEW 369


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 86  RMIFIYLLNINRWHLLDGD 30
           R+IF Y+    ++HLLDGD
Sbjct: 272 RLIFYYINQNRKFHLLDGD 290


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 376 FVFSYDLKNIVLQFYCNCFL*FTMSISFYLI 468
           F  SY  +  +++FY NC L  ++ +S +LI
Sbjct: 253 FALSYYQQIPMIEFYSNCVLVQSLILSLFLI 283


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 376 FVFSYDLKNIVLQFYCNCFL*FTMSISFYLI 468
           F  SY  +  +++FY NC L  ++ +S +LI
Sbjct: 253 FALSYYQQIPMIEFYSNCVLVQSLILSLFLI 283


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 376 FVFSYDLKNIVLQFYCNCFL*FTMSISFYLI 468
           F  SY  +  +++FY NC L  ++ +S +LI
Sbjct: 253 FALSYYQQIPMIEFYSNCVLVQSLILSLFLI 283


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 249 FFKL---ADYCLQIPYTMYIYTTRIILSPIFLLT 157
           FF+L   +  CL I Y  Y+   RI  SP+F+ T
Sbjct: 29  FFELRLFSPQCLFIVYFFYLLHVRINTSPLFIKT 62


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 376 FVFSYDLKNIVLQFYCNCFL*FTMSISFYLI 468
           F  SY  +  +++FY NC L  ++ +S +LI
Sbjct: 253 FALSYYQQIPMIEFYSNCVLVQSLILSLFLI 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,590
Number of Sequences: 5004
Number of extensions: 55149
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)