Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_N01
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine rece...    35   0.055
Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    30   1.6  
AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical ...    29   2.7  

>U97009-1|AAC69030.2|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 32 protein.
          Length = 339

 Score = 35.1 bits (77), Expect = 0.055
 Identities = 22/55 (40%), Positives = 28/55 (50%)
 Frame = +1

Query: 334 RLPNTERGFFCFLKFVFSYDLKNIVLQFYCNCFL*FTMSISFYLIYLVTSRFPYS 498
           R+ N   GF  FL   +SY +   +L F  N FL   +S+ F  I L T RFP S
Sbjct: 74  RIVNIYLGFSQFLGHWWSYMIFTTMLHFAVNSFLSIMLSMVFRCISLKTLRFPTS 128


>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 113 WVCIGFSNIRMIFIYLLNINRWHLLD--GDGW 24
           W+C+ F+ +R+I +  +N NR+ +L   G GW
Sbjct: 104 WLCVLFALVRVIVLQKINDNRFQILSAPGFGW 135


>AC090999-3|AAK26147.1|  536|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.7 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = -2

Query: 268 SN*YG-CFL*TSRLLLTDSVHHVYLHY*NYFKPDIFINNGTINSIKYAICRLIGCALAFL 92
           +N YG C L T R        H    + N  K   +  N T+N+I   + +L  CA++  
Sbjct: 48  TNLYGICVLSTDRCACQSLALHSSNIFENIPKGHPYFRNVTLNNINNPVIKLEDCAISMY 107

Query: 91  TSG*FSFIY*T-*IDGTCLTAT 29
             G +  ++ +   DG C  +T
Sbjct: 108 CEGDYKLLFGSLSADGFCEAST 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,905
Number of Sequences: 27780
Number of extensions: 300880
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)