Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M21
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    27   2.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.8  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 8   ILKSWIFVNSFSQNLLSSFASXTLHVTKLNLVFKGSHXA 124
           IL +WI  N+ S N +S  +  T HV  L+  + G H A
Sbjct: 391 ILSTWIGSNT-STNTISGTSMATPHVAGLSAYYLGLHPA 428


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = -2

Query: 586  TATITIFTKIV*CKLIGSYVENCFE*GYTLVCCNIFSFVKNII*SIML*QTYNASMFLLN 407
            T T T+  +++  ++I SY++   E GY+ VC    S ++ +  +    + Y AS+  LN
Sbjct: 1719 TDTSTVLDQVI--RIIQSYIDVSAELGYSHVCLQYISLMQCLKQACYPSEIYRASLPGLN 1776


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 232 YKHRA*FSNLINNVVLKREEWSIRNLEKNEY 324
           Y H A FSNL+N+V+   ++ +++ LEK ++
Sbjct: 413 YDHIALFSNLMNSVLPNLQQLNLK-LEKTKW 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,850
Number of Sequences: 5004
Number of extensions: 44301
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)