Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M21
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0087 + 15073687-15074179,15074490-15074509                       30   1.2  
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168...    29   2.1  
04_03_0513 - 16681227-16683936,16685572-16685966                       29   2.8  

>02_03_0087 + 15073687-15074179,15074490-15074509
          Length = 170

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 539 WLLCRELF*IRIHISVLQHI*FCKKYNMKY 450
           W+L RE   IR+HISVLQ   FC  + + +
Sbjct: 144 WVLVREFLLIRVHISVLQ---FCSVHGISH 170


>07_03_0851 +
           22012836-22014017,22016668-22016734,22016774-22016868,
           22017304-22017717
          Length = 585

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 299 LEILKRMNIYVYNNSSQKLQHRFQYRYS--LP*TNLYKIK*KHR 424
           +E L  ++IYV+   S++L  RF Y  S  +P  N  KI+ KHR
Sbjct: 428 IETLYDLDIYVHKILSKQLCKRFSYTTSFVVPKANELKIQLKHR 471


>04_03_0513 - 16681227-16683936,16685572-16685966
          Length = 1034

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 226 TCXTFRIKSISVWFVLYIIIIRHCCSSTRYST 131
           TC    + +++V  +L + II+H CS + YS+
Sbjct: 5   TCSRLLLSTLAVHLLLLLAIIQHSCSLSTYSS 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,231,635
Number of Sequences: 37544
Number of extensions: 203927
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)