Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M17
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448...    35   0.071
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760...    33   0.29 
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629...    31   0.87 
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154...    30   1.5  
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065...    29   2.7  
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137...    29   4.7  
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803...    28   6.2  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     28   8.1  

>08_02_1026 +
           23743186-23743686,23743793-23743915,23744734-23744850,
           23744948-23745001
          Length = 264

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -3

Query: 693 RDNLTXWTSDMQGDG--ESADAEQKE 622
           RDNLT WTSDMQ DG  E  DA + E
Sbjct: 236 RDNLTLWTSDMQDDGGDEMRDATKPE 261


>11_06_0036 +
           19474848-19475188,19475696-19475774,19475880-19476002,
           19476970-19477086,19477169-19477228
          Length = 239

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 693 RDNLTXWTSDMQGDGESADAEQKEPAQDGE 604
           RDNLT WTSD   DG     E   P + G+
Sbjct: 209 RDNLTLWTSDANDDGGDEIKEAAAPKEPGD 238


>03_05_0881 +
           28461857-28462263,28462357-28462435,28462798-28462920,
           28463632-28463748,28463861-28463917
          Length = 260

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 693 RDNLTXWTSDMQGDGESADAEQKEPAQDG 607
           RDNLT WTSD   DG     E  +P  +G
Sbjct: 231 RDNLTLWTSDNAEDGGDEIKEAAKPEGEG 259


>01_01_0181 -
           1548392-1548466,1548689-1549379,1549475-1549604,
           1549704-1549884
          Length = 358

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 584 HYETSXSSPSCAGSFCSASADSPSPCMSEV 673
           H + S S+ + AGS  +A+A  P PC SE+
Sbjct: 214 HIDPSPSTSTSAGSTAAAAAFQPLPCFSEL 243


>08_02_0753 -
           20805672-20805731,20805825-20805941,20806394-20806516,
           20806700-20806778,20806867-20807258
          Length = 256

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 693 RDNLTXWTSDMQGD-GESADAEQKEPAQDGE 604
           RDNLT WTSD+  D G+      K  A +G+
Sbjct: 226 RDNLTLWTSDLTEDGGDEVKEASKGDACEGQ 256


>12_02_0330 -
           17612867-17613161,17613376-17613459,17613554-17613744,
           17614085-17614995,17615081-17615252,17615337-17615412,
           17615515-17615634,17615841-17616005,17616096-17616186,
           17616644-17616785,17616848-17617042,17617132-17617185,
           17617299-17617397,17618181-17618296,17618376-17618442
          Length = 925

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 538 KSQPAVPTRGPGTALSLFVFDYGKYIICNI-ILWYCILTVV 419
           +S P V    PG +  LFVFD  K+ +C + +L YC++  V
Sbjct: 864 RSTPFVDGACPGISCPLFVFD--KFWVCFVEVLSYCMICPV 902


>04_04_0141 +
           23079516-23079925,23080006-23080084,23080204-23080326,
           23081655-23081771,23081886-23081945
          Length = 262

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 693 RDNLTXWTSDMQGDGESADAEQKEPAQD 610
           RDNLT WTSD+  D  +A+  ++ P +D
Sbjct: 232 RDNLTLWTSDISED--TAEEIREAPKRD 257


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -3

Query: 309 LL*LLTSIVIEIFVYFNLFFLISQSISKMKCSAPPPGRSVVVTLC*VKVMHLRKYLLSAQ 130
           +L +LT I+IE   +   F     +I +M CS   P R  +  +  V V+++R  LLS+ 
Sbjct: 444 MLLVLTVILIEAHDFLTSFVFSDWNIVRMLCSYDRPSRRWLQKIYSV-VIYIRSCLLSSS 502

Query: 129 R 127
           +
Sbjct: 503 K 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,419
Number of Sequences: 37544
Number of extensions: 286417
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)