Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_M16
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 175 6e-45
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 175 6e-45
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 175 6e-45
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 132 7e-32
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 3.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 5.1
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 26 5.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 6.7
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 6.7
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 8.9
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 8.9
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 175 bits (426), Expect = 6e-45
Identities = 85/93 (91%), Positives = 89/93 (95%)
Frame = -1
Query: 673 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 494
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVS 103
Query: 493 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 395
LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = -3
Query: 758 APRXQLATKAARKSAPSTGGVKKPHRYRP 672
APR QLA+KAARK+AP+TGGVKKPHRYRP
Sbjct: 16 APRKQLASKAARKAAPATGGVKKPHRYRP 44
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 175 bits (426), Expect = 6e-45
Identities = 85/93 (91%), Positives = 89/93 (95%)
Frame = -1
Query: 673 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 494
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVS 103
Query: 493 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 395
LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = -3
Query: 758 APRXQLATKAARKSAPSTGGVKKPHRYRP 672
APR QLA+KAARK+AP+TGGVKKPHRYRP
Sbjct: 16 APRKQLASKAARKAAPATGGVKKPHRYRP 44
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 175 bits (426), Expect = 6e-45
Identities = 85/93 (91%), Positives = 89/93 (95%)
Frame = -1
Query: 673 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 494
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVS 103
Query: 493 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 395
LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct: 104 LFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/29 (86%), Positives = 28/29 (96%)
Frame = -3
Query: 758 APRXQLATKAARKSAPSTGGVKKPHRYRP 672
APR QLA+KAARK+AP+TGGVKKPHRYRP
Sbjct: 16 APRKQLASKAARKAAPATGGVKKPHRYRP 44
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 132 bits (318), Expect = 7e-32
Identities = 67/96 (69%), Positives = 81/96 (84%), Gaps = 6/96 (6%)
Frame = -1
Query: 673 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEAS 512
PGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F TD LR+QS A+ LQEA+
Sbjct: 24 PGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAA 83
Query: 511 EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 404
EA+LV LFEDTNLCAIHAKRVTIM +D+QLARRIRG
Sbjct: 84 EAFLVHLFEDTNLCAIHAKRVTIMQRDMQLARRIRG 119
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 434 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 610
LR+ T + + + QA LE S + Q+ SFEIL +TLE
Sbjct: 73 LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132
Query: 611 TDKQLSR 631
++ +SR
Sbjct: 133 SNPNISR 139
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 473 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTN 649
Q+G F +AN I A + + E + EIL ER L+ K+ +R T+N
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSN 169
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 597 WKGSLRISNSVDF**RRISRRATVPGAITMWLLD 698
W S+R + S++ RI RR PG + W+LD
Sbjct: 335 WHNSIRHNLSLNKAFIRIPRRQNEPGKGSFWMLD 368
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = -1
Query: 649 IRRYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYLVGLFE 485
+ +++ S LLI P Q +RE+A DF +F + + A E EAY+ L E
Sbjct: 524 LSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQE 583
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 661 ALREIRRYQKSTELLIRKLPFQR 593
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -2
Query: 738 YKSGAKISAEHWWSQEATSL---SPLVQWPFVK 649
YK G ISA H W++E + L S +VQW FV+
Sbjct: 50 YK-GQTISASHKWTREHSGLFDVSHMVQW-FVR 80
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 518 LLESSDGGRLETQISFEILSD 580
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,994
Number of Sequences: 5004
Number of extensions: 52818
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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