Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_M15
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 42 7e-05
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 31 0.13
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 27 1.6
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 27 2.9
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.0
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 5.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.0
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 8.8
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 8.8
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 41.9 bits (94), Expect = 7e-05
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = -2
Query: 617 GGWXTHYTLGYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKL 438
GGW + L + +P YE S N + DM ++ V + PEG+T I++
Sbjct: 315 GGWNYLFQLDWKMP-YEEFRSSKNRREYLDIPLAWSPGDMIYEKAVWSYVFPEGATNIEI 373
Query: 437 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDF-QIRYTF 297
+P ++ + +LDT GR V ++ N+ + D I Y +
Sbjct: 374 EMPVEISNSNVTKIHKFLDTLGRQVFTYEALNVTDGVPSDIVHISYEY 421
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 31.1 bits (67), Expect = 0.13
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 317 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLD 207
F +TFP L++ EP+L+V YT F+ I+Y L+
Sbjct: 291 FHKYFTFPLRLLIFEPILLVVSTYTAFVYGILYGLLE 327
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 584 NVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIK 441
N+ + LYH L++ + H F+D VD + +I L + STG+K
Sbjct: 293 NIAVIKQLYHE-----LQIPELYHKFEDDMVDSISKEIDLIDESTGLK 335
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Frame = -1
Query: 330 PYPRFSNPLY----IPTSADVAGTTFSCWL 253
P P S+PLY IPT D+ T S WL
Sbjct: 277 PMPLISHPLYSSSWIPTLHDLVSTRCSVWL 306
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -2
Query: 542 YLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPV 363
Y ++ + H+ Q +E + + S KL ++ R P S + LDT R
Sbjct: 1557 YTIESNTTAHLL--CQFEEACRQALTSSKSVRTKLRAISTIQRFPVSEWVSKLDTHVRNC 1614
Query: 362 ISFI-KKNIVENHIQD 318
I F K+N+ E+ I +
Sbjct: 1615 IKFSHKQNLEEDFIHE 1630
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 404 SLHFTYLDTKGRPVISFIKKN 342
S+ F +D G PVI F+K+N
Sbjct: 1511 SVDFQSVDCHGNPVIEFLKRN 1531
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 5.0
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = -2
Query: 563 LYHSGNEYLLKMR---SIDHIFDDMQ-VDELV-TKIILPEGSTGIKLNIPYSVTRLPDSL 399
LY + E L+ R S D++ + VD+L+ TKI++ G T P + + L D L
Sbjct: 356 LYQTRRELLVATRHVLSTDYLRGFLPYVDQLLDTKILVGSGITSQHSLRPMAFSMLADML 415
Query: 398 HFTYLDTKGRPVISFI 351
H+ ++ + + I
Sbjct: 416 HYVRMELSPQQIYKVI 431
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 8.8
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -2
Query: 599 YTLGYNVPSYEYLYHSGNEYLLK-MRSIDHIFDDMQVDELVTKIILPEGSTGI---KLNI 432
Y L YN YE HS Y LK R + H F + L + L ST I L++
Sbjct: 312 YVLDYNGEQYELYQHSHLGYGLKEARKLIHKFVLNNAEALKESLELLGDSTSIIHPCLHL 371
Query: 431 PYSVTRLPDS 402
S+T PDS
Sbjct: 372 NASLTH-PDS 380
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 233 TKTMYIRSQQLKVVPATSADVGMYNGFEN 319
+K MYIRS + P T D N +E+
Sbjct: 155 SKNMYIRSVTRVITPGTLIDENFMNPYES 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,241
Number of Sequences: 5004
Number of extensions: 55205
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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