Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_M13
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.52
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 29 0.69
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 27 2.1
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.1
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 2.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.7
SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.7
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 4.9
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 6.4
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 25 8.5
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 25 8.5
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 8.5
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 29.5 bits (63), Expect = 0.52
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = -1
Query: 524 LDKVSDHFEQQMRAYKVPSIKNYPRPITETAKGPPENLLDYYPLAEYCNGM-------LT 366
+D+VS+ +E Y P + +TET + +L+ YP+ E N +
Sbjct: 37 VDQVSEEYE----FYTYPKKASEVESVTETFQSNRSSLVPTYPVDENANKLPPKVSIAFI 92
Query: 365 VLNSLRVTAPLNIAKEVYNSYKESLNST 282
++NSL L +A SY +SL T
Sbjct: 93 LINSLMSDMSLAVALPTSASYTQSLGGT 120
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 29.1 bits (62), Expect = 0.69
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -1
Query: 335 LNIAKEVYNSYKESLNSTVQVLLNFYYREQQGFT-DVERQNYVSLCLSFRDDLIPYITKC 159
LN+A E Y S+ S+NS ++ + E+ GF D QN + L + D L I +
Sbjct: 786 LNVAAETYFSFLASVNSFQELDQEWSRLEKLGFEYDDSLQNKRIIWLLYDDRLDAAIKRV 845
Query: 158 LSQSFPSTQIAELL 117
+ S +I EL+
Sbjct: 846 YNIFLSSKRIEELI 859
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = -1
Query: 470 SIKNYPRPITETAKGPPEN---LLDYYP 396
+I NYP P+T A GP N LL YP
Sbjct: 125 TISNYPEPVTLVATGPLTNIALLLATYP 152
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 2.1
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -1
Query: 461 NYPRPITETAKGPPENLLDYYPLAEYCNGMLTVLNSLRVTAPLNIAKEVYNSYKE-SLNS 285
N P+ +TE G NL L + + L + +LR P + A Y+ K S S
Sbjct: 1108 NQPKQVTEKL-GVQLNLPKTKILEKVSSHSLAQITALREKEPKD-ADSTYSKEKIFSATS 1165
Query: 284 TVQVLLNFYYREQQGFTDVERQNYVSL 204
TV + L Y ++ F D + Y L
Sbjct: 1166 TVHLQLMDYDKQNNDFVDAQEIAYTKL 1192
>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 295 DSLYELYTSLAMFNGAVTLKEFKTVSIPLQYS 390
D Y+ YT+ TL+EFK+V IP++Y+
Sbjct: 307 DDYYD-YTTRPRRTVLETLQEFKSVQIPIEYA 337
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 3.7
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Frame = -1
Query: 416 NLLDYYPLAEYCNGMLTVLNSLRVTAPLNIAKEVYNSYKESLNSTVQ-VLLNFYYREQQG 240
N+L YP+ +C GM + L++A+ + + L Q +L+N+ Y +
Sbjct: 896 NILHLYPIETFCFGMSAIGAYF-----LDVARTSEPIFYKCLEILAQKILMNYDYERDEV 950
Query: 239 FTDV---ERQNYVSLCLSFRD---DLIPYITKCLSQSFPSTQIAELLG 114
+ + Q V L F D LI ITK + + F T+ + L G
Sbjct: 951 YLMIFIKIFQKCVHSKLQFTDATLKLIVKITKFIEKVFIETKFSSLSG 998
>SPBC2D10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 517 KSVITLSNKCVHTKFLVSKTIQDQLRKRQRVLPKTSLITIH*QSTAME 374
KS N +H + KTI+ QLR + L + + IH AME
Sbjct: 9 KSASKAPNAIIHGRVASKKTIKKQLRNGKYSLKRLAEKGIHLDDIAME 56
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 143 PSTQIAELLGVTLTVLQDSKILYIDLHAM 57
P+T AELLG+ T L ++ ++ +L A+
Sbjct: 1055 PNTSPAELLGIKFTTLPMAQYIHSELEAL 1083
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 667 PKFXFKICAKISTFNFNQFDRAL 735
PKF F + IS+ NFN ++ +L
Sbjct: 202 PKFRFSVSPWISSSNFNPYEASL 224
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/84 (25%), Positives = 33/84 (39%)
Frame = -1
Query: 638 LLNQCMYLCLSFGRVGADMRCVLTPLFRDCILKQFHSSLDKVSDHFEQQMRAYKVPSIKN 459
L+ C +C F ++ + P D + KQ H SL + H + +PS
Sbjct: 70 LVGTCRQMCPEFELEERKLQHAIHPYELDPVSKQAHPSLAVKAYHRPAAGKGPILPSDVR 129
Query: 458 YPRPITETAKGPPENLLDYYPLAE 387
P + T + +LD Y L E
Sbjct: 130 PPSILKNTIDYLFKVILDRYSLRE 153
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 197 SFRDDLIPYITKCLSQ 150
S R DLIPY+ KC Q
Sbjct: 271 SIRGDLIPYLVKCQYQ 286
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +1
Query: 517 LSRLEWNCFSMQSR----NSGVKTHRMSAPTLPN 606
+ LEW +R NSG+ +R+ +PTLP+
Sbjct: 376 MEMLEWGSVINNAREHCINSGISANRILSPTLPS 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,691
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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