Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M13
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0645 + 21475126-21475293,21475386-21475538,21478101-214782...    79   5e-15
05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784           28   6.7  

>12_02_0645 +
           21475126-21475293,21475386-21475538,21478101-21478249,
           21478449-21478526,21478604-21478697,21478920-21478994,
           21479341-21479637,21479722-21479789,21479876-21479930,
           21480137-21480275,21480439-21480623,21480748-21481119
          Length = 610

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 6/180 (3%)
 Frame = -1

Query: 650 NFESLLNQCMYLCLSFGRVGADMRCVLTPLFRDCILKQFHSSLDKVSDHFEQQMRAYK-- 477
           +  ++  QCMY  +  G VG D R +L P+F   +L  F  ++    ++F+  + +++  
Sbjct: 329 SLSNIREQCMYCAMGLGLVGLDFRGLLPPIFEKAVLNLFSKNMGTAVENFQVVLDSHRWV 388

Query: 476 -VPSIKNYPRPITETAKG---PPENLLDYYPLAEYCNGMLTVLNSLRVTAPLNIAKEVYN 309
            +PS+      + +       PP  L+++ PLA + NG+   +N LR  APL++   +  
Sbjct: 389 PMPSVGFVANGVVDETSDDVTPPSVLMEHPPLAVFVNGVSAAMNELRPCAPLSLKNVLAE 448

Query: 308 SYKESLNSTVQVLLNFYYREQQGFTDVERQNYVSLCLSFRDDLIPYITKCLSQSFPSTQI 129
              + L +    L+   Y   +     E   ++SLC +F +   PY + C  + +P+  I
Sbjct: 449 EVVKGLQAVSDSLVR--YNAMRMLRGNESSLFLSLCQAFIEVAYPYCSACFGRCYPNGAI 506


>05_02_0151 - 7115201-7115668,7115851-7116137,7117355-7117784
          Length = 394

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -1

Query: 668 GKEDEANFESLLNQCMYLCLSFGRVGADMRCV-LTPLFRDCILKQFHSSLDKVSDHFEQQ 492
           GKE++  F   + QC  + + +G    ++R V + P   D ++    + L+K  +   + 
Sbjct: 308 GKEEKFEFRPRIEQCSMVKIKYGPNPQNIREVEVKPSKTDSLIAFMKNFLEK--EAMGRH 365

Query: 491 MRAYKVPSIKNYPRPITETAKGPPE 417
               KV S     +P+T  AK P +
Sbjct: 366 RPDPKVASRTQAKKPVTPAAKKPQD 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,110
Number of Sequences: 37544
Number of extensions: 339779
Number of successful extensions: 795
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)