Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M13
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical ...    47   1e-05
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    29   2.6  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    28   7.9  

>AF038615-4|AAB94143.1|  743|Caenorhabditis elegans Hypothetical
           protein R02D3.2 protein.
          Length = 743

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 4/227 (1%)
 Frame = -1

Query: 734 SALSNWLKLKVEIFAHILNXNLGKEDEANFESLLNQCMYLCLSFGRVGADMRCVLTPLFR 555
           S LS W+   V+    ++      +   +  ++  + M +  SFGR+G D R ++     
Sbjct: 279 SILSQWVISNVKKMLDLIT-KADVKSAVDLSAVWTKLMAMASSFGRMGIDFRPLIAGKLT 337

Query: 554 DCILKQFHSSLDKVSDHFEQQMRAYKVPSIKNYPRPITETAKGPP----ENLLDYYPLAE 387
             I ++F  ++ + +       R   +  I     P  ETA   P      L  +  +  
Sbjct: 338 KLIEQRFRQNVQEATSRLTGSSRDIVMIGIDPASLPQFETAPDSPPVAAAELSLWDDMTI 397

Query: 386 YCNGMLTVLNSLRVTAPLNIAKEVYNSYKESLNSTVQVLLNFYYREQQGFTDVERQNYVS 207
           Y N ++  LN LR      +   V  S ++S+ S +  L +  +     F+   R     
Sbjct: 398 YTNSVVDALNGLRFILTPVVLSTVVVSLRDSIRSILTWLAS-SHSNSANFSRAVR----I 452

Query: 206 LCLSFRDDLIPYITKCLSQSFPSTQIAELLGVTLTVLQDSKILYIDL 66
           +C S    + P+  KC++  FP   ++++ G +++  Q  + + +D+
Sbjct: 453 VCTS----VAPFFEKCVAFFFPPATVSKIFGSSISKRQYLQFIELDM 495


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 557 RDCILKQFHSSLDKVSDHFEQQMRAYKVPSIKNYPRPITETAKG 426
           RD    + H+++ ++ D FE+  RA +      Y + ITE  KG
Sbjct: 252 RDYFHNELHAAMKEIRDRFEKDSRAARKTWEDWYHKKITEIKKG 295


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 524 LDKVSDHFEQQMRAYKVPSIKNYPRPITETAKGPPENLLDYYP 396
           +DK S+  +  ++   V  +   P  +T T KGP E L+   P
Sbjct: 275 IDKFSEQLDNALKLSNVEPVAPSPYVMTITGKGPAEKLMKEVP 317


>Z49913-4|CAA90147.1|  498|Caenorhabditis elegans Hypothetical
           protein ZK938.5 protein.
          Length = 498

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 431 KGPPENLLDYYPLAEYCNGMLTVLN-SLRVTAPLNIAKEVYNSYK 300
           K P +N++ Y     YC  +L  LN   R+  P +   E+YN  K
Sbjct: 393 KSPYKNVIKYDERDSYCKYVLAYLNEGKRLAQPAHADAEIYNVMK 437


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 521  DKVSDHFEQQMRAYKVPS--IKNYPRPITETAKGPPENLLD 405
            +K+ +H E+++ AYKVPS  +     P+T T K   + L++
Sbjct: 1159 EKLKNHLEKELIAYKVPSRLVGLDSFPLTRTGKIDKKKLVE 1199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,767
Number of Sequences: 27780
Number of extensions: 335766
Number of successful extensions: 829
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)