Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M10
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   2.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   5.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.6  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   8.8  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    25   8.8  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 59  RNLISTDQETSVFSVSFLTYSN 124
           R+LIST    ++FS  F+ YSN
Sbjct: 81  RHLISTGHVQNIFSAKFVPYSN 102


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 381  KQK-KNIVKLCIYVHSM 334
            KQK +N++K CIYVH M
Sbjct: 1632 KQKSENLLKSCIYVHEM 1648


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 108  KLTLNTLVSWSVEIKFLHNLNIMSYENIYV 19
            +  +   V  S+E K+  NL   S ENIY+
Sbjct: 3464 RTNIERCVQTSIESKYYKNLTDYSLENIYI 3493


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 569 LGTEIDIITSVRRAPVTYMAVKRLNIKIIPYFIQIKDEFDS 447
           L  E+ I+TS   AP   + V   ++K   Y I  +  +DS
Sbjct: 128 LNKELKIVTSKPSAPSKLVIVANFDLKAFNYRIMYQKLYDS 168


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 612 NSAGRYTVYNVLLNSRNRNRHNYFRT*GTGDLHGCQKVK 496
           NS+ R  V+ VLLN+  RN   Y R    G     QK++
Sbjct: 43  NSSTRPYVWAVLLNAPPRNADEYIRYVRQGPSPMAQKIQ 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,126
Number of Sequences: 5004
Number of extensions: 45325
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)