Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M07
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    60   2e-10
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    28   1.0  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    27   1.8  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   2.4  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   5.5  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   7.2  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 11/199 (5%)
 Frame = -1

Query: 635 PVXASNPQQQEQVRLVRLCLY--REGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSG 462
           P   + P + +  + +R  LY  R GF+VD GP+  Y DP N E L  I  G  P  L G
Sbjct: 197 PPRENPPTESQPEKPLRRTLYFWRNGFSVDDGPIYTYDDPANQEMLRYINSGRAPLHLLG 256

Query: 461 QGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSP-TPP--------XXXXXXXXXXX 309
             ++  + +   +H     +V   + F+GKG  LGS    P                   
Sbjct: 257 VSMNQPIDVV-VQHRMDEDYVAPFKPFSGKGQRLGSTYMQPRMSQMPGGLYTDTSTSSSV 315

Query: 308 XXXXXANLRAAQSAVTLDETQPVNTXQFRLADGTRITGRFNHSHTVGAXREFVSRAEPAY 129
                 N     +++ +DE +P    Q RL++G R     N SHT+    E V    P  
Sbjct: 316 PINVKPNSTTPHASLQIDENKPTTRIQVRLSNGGRTVLTVNLSHTLHDIYEAVRAVSPG- 374

Query: 128 QLRPFSXLTAFPSAEXGDD 72
               F     FP+    DD
Sbjct: 375 ---NFILSVPFPAKTLEDD 390


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -1

Query: 530 SDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSP 351
           S PENA +L  +   EI S +     S++ S  D R  + P H +   A  G G M   P
Sbjct: 138 SCPENAIYLVVLPSYEIESSIDYYLSSLQESFSDFRVPKDPLHGLSGYAVFGLGDMENYP 197


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 488 RGVCSSGTPHSPGRCSGAAD 547
           RG+C+  TP SPG   G  D
Sbjct: 9   RGLCTPSTPESPGSFKGVID 28


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/78 (24%), Positives = 36/78 (46%)
 Frame = -1

Query: 650 ADDHEPVXASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSE 471
           A+D   + +S P+ + +  +       EG   +A  L+  S PEN    S + +  +P +
Sbjct: 469 AEDSVVLKSSVPEDKSENSIASKPSATEGIPENAIALQS-SVPENKAEDSVVLKSSVPED 527

Query: 470 LSGQGVSVRVSLEDSRHE 417
            S   V  + S+ + +HE
Sbjct: 528 KSEDSVPSKSSVLEDKHE 545


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = -1

Query: 554 DAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAG 375
           D+  L   SD  + +  S   R      +S   VSV VSL  +     P+   K +  A 
Sbjct: 278 DSSDLSSTSDSSSGDESSDTARQSSSDTISSNNVSVSVSLNTANEFSFPQGTFKAENEAV 337

Query: 374 KGHML-GSPTPP 342
           +  +   S TPP
Sbjct: 338 ESEVAPSSSTPP 349


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -1

Query: 542 LRHYSDPENAEF 507
           LRHYS+PE AEF
Sbjct: 638 LRHYSNPEIAEF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,879
Number of Sequences: 5004
Number of extensions: 25723
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)