Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_M07
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 95 3e-20
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 91 5e-19
06_03_0941 + 26179682-26182327 32 0.46
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869 29 3.2
03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,945... 29 4.3
11_04_0220 + 14991666-14992892 27 9.9
09_03_0085 - 12209697-12210457,12212823-12213255 27 9.9
03_05_0570 + 25703634-25703954 27 9.9
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 95.5 bits (227), Expect = 3e-20
Identities = 58/194 (29%), Positives = 85/194 (43%), Gaps = 1/194 (0%)
Frame = -1
Query: 653 TADDHEPVXASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPS 474
T + EPV PQ E + + + + GFTV+ GPLR + DP NA FL I+ E PS
Sbjct: 244 TGESAEPVA---PQSPESI-VHNIYFWTNGFTVNDGPLRSFDDPANASFLKSIKNSECPS 299
Query: 473 ELSGQGVSVRVSLEDSRHEE-CPRHVVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXX 297
EL +V++ R EE CP V + F G LG+P+
Sbjct: 300 ELEPADKKSQVNVNLVRKEEKCPEPVKRAAPFHGAAKTLGTPSDNNSTPPEATSAAAAAS 359
Query: 296 XANLRAAQSAVTLDETQPVNTXQFRLADGTRITGRFNHSHTVGAXREFVSRAEPAYQLRP 117
+ +T+D++ P + Q R DG+R+ FN SHT+ R F+ P +
Sbjct: 360 STETASKTVTITVDDSLPSTSLQIRFVDGSRMVAHFNTSHTIADVRAFIDTTRPG-EAGD 418
Query: 116 FSXLTAFPSAEXGD 75
++ FP D
Sbjct: 419 YTLQAGFPPKPLDD 432
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 91.5 bits (217), Expect = 5e-19
Identities = 56/171 (32%), Positives = 79/171 (46%), Gaps = 2/171 (1%)
Frame = -1
Query: 575 YREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSEL--SGQGVSVRVSLEDSRHEECPRH 402
+ GFTVD GPLR Y DP NA+F+ I++ + P EL + + V V++ R E+
Sbjct: 163 WNNGFTVDDGPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVI-KRLEDYQAP 221
Query: 401 VVKPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXANLRAAQSAVTLDETQPVNTXQFR 222
+ P F G G LG + + +D++ P + Q R
Sbjct: 222 LRPPSPFQGVGRTLGGGSSAEESQAPAPATQEPRRSVG-------IVVDDSLPFTSIQLR 274
Query: 221 LADGTRITGRFNHSHTVGAXREFVSRAEPAYQLRPFSXLTAFPSAEXGDDA 69
LADGTR+ RFN HTVG R F+ + P RP+ T FP + D A
Sbjct: 275 LADGTRMVARFNMHHTVGDIRSFIDASRPG-ATRPYQLQTGFPPKQLADPA 324
>06_03_0941 + 26179682-26182327
Length = 881
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -1
Query: 635 PVXASNPQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQG 456
P+ A + + Q+++ R V AGP HY +P N + + I + E P +G
Sbjct: 347 PLDAEDKEDQDRITAER----NTPLVVTAGPSLHYPNPPNPDKVLYINKKEAPLLKVERG 402
Query: 455 VSVRVSLE 432
V V S+E
Sbjct: 403 VPVTFSVE 410
>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
Length = 664
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/80 (30%), Positives = 30/80 (37%)
Frame = -1
Query: 581 CLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRH 402
C +E + A RH E EFLS R P L G ++S ED R
Sbjct: 368 CTIQESYAAAAAAARHPKPDEQVEFLSSSRAMTTPLLLQNGG---QLSSEDVR--RLAAA 422
Query: 401 VVKPQAFAGKGHMLGSPTPP 342
++ P A M PT P
Sbjct: 423 LLPPTPSAAVSPMQRKPTKP 442
>03_02_0557 + 9450212-9450346,9450553-9450633,9450768-9451114,
9451345-9451945,9452206-9452239,9452514-9452577,
9452909-9453325,9453439-9453523,9453773-9453831,
9453931-9454043,9456407-9456509,9456597-9456654,
9456781-9456834,9456922-9457131,9457254-9457312,
9457436-9457495,9457709-9457802,9458366-9458506,
9458562-9458741
Length = 964
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 644 DHEPVXASNPQ---QQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRR 489
D + V A+N + L+ LCL E F D L +P+ ++C+RR
Sbjct: 903 DEQLVLANNSNLSNNSTDIALLMLCLLTEAFYADGTSLGDVCEPKLGAEITCLRR 957
>11_04_0220 + 14991666-14992892
Length = 408
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 597 ETGETVSVPRRLHGGRGSAAPLQRPGECG 511
+ G T S P L R S PL PG CG
Sbjct: 376 DPGATTSEPWGLRFARASDHPLPAPGSCG 404
>09_03_0085 - 12209697-12210457,12212823-12213255
Length = 397
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 158 EFVSRAEPAYQLRPFSXLTAFPSAEXGDDAANHGAGEPAXLDGHAAA 18
+ +SR+ A L+P L +A G AAN+ AG A G AAA
Sbjct: 215 KLLSRSLLAGALQPARHLMITLAAAAGGAAANNAAGTSAGAGGSAAA 261
>03_05_0570 + 25703634-25703954
Length = 106
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 570 RRLHGGRGSAAPLQRPGECGVPELHTP 490
R+ GG G A+P + GE VP H P
Sbjct: 5 RKSGGGSGGASPCRENGEDEVPRGHVP 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,324,678
Number of Sequences: 37544
Number of extensions: 236170
Number of successful extensions: 900
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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