Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M07
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    27   0.52 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   2.1  
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    25   2.8  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 27.1 bits (57), Expect = 0.52
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 570 RRLHGGRGSAAPLQRPGECGVPELHTPR 487
           R L G RG   P  RPG  G P L  P+
Sbjct: 760 RGLQGLRGDVGPEGRPGRDGAPGLPGPK 787


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 564 LHGGRGSAAPLQRPGECGVP 505
           LHG +G + P   PG  G+P
Sbjct: 372 LHGLKGQSGPKGEPGRDGIP 391


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 653 TADDHEPVXASNPQQQEQVRL 591
           + DDH+P+   N QQQ + +L
Sbjct: 42  SVDDHQPLQQKNLQQQRREQL 62


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,576
Number of Sequences: 2352
Number of extensions: 7160
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)