Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_M07
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-9|AAF60887.2|  301|Caenorhabditis elegans Hypothetical ...    78   6e-15
AC024876-10|AAP31418.1|  193|Caenorhabditis elegans Hypothetical...    63   1e-10
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    29   2.9  
AF106584-2|AAC78222.2|  316|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.8  
X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.     27   8.8  
X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.     27   8.8  
AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen prot...    27   8.8  

>AC024876-9|AAF60887.2|  301|Caenorhabditis elegans Hypothetical
           protein Y94H6A.9a protein.
          Length = 301

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 56/199 (28%), Positives = 84/199 (42%), Gaps = 16/199 (8%)
 Frame = -1

Query: 617 PQQQEQVRLVRLCLYREGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVS 438
           P  +E + L  L L+ +G +++ GPL    DP   EFL  + +GEIP  L  Q     + 
Sbjct: 84  PSGRETISLT-LHLWSDGLSIEDGPLMSRQDPRTIEFLESVGKGEIPPSLVQQYPGKEID 142

Query: 437 LEDSRHEECPRHVV-KPQAFAGKGHMLGSPTPPXXXXXXXXXXXXXXXXAN--------- 288
            + +RH E   +V  K + F G G  LG+  P                 A          
Sbjct: 143 FKVNRHHE--EYVAPKMKPFGGSGVRLGNVVPTVLGQSSSSATTAGTSSATTDHNPDHTA 200

Query: 287 ------LRAAQSAVTLDETQPVNTXQFRLADGTRITGRFNHSHTVGAXREFVSRAEPAYQ 126
                 L  A+  ++ +  +P    Q RL +  R+ G FNHSHT+ A R F+  A P   
Sbjct: 201 ENEAKQLEDAKKELSTNMNEPTTNIQIRLPNNQRLVGIFNHSHTLEAVRTFICTARPDMI 260

Query: 125 LRPFSXLTAFPSAEXGDDA 69
             PF  + A+P     D++
Sbjct: 261 YAPFQMMAAYPPKPFEDES 279


>AC024876-10|AAP31418.1|  193|Caenorhabditis elegans Hypothetical
           protein Y94H6A.9b protein.
          Length = 193

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 16/169 (9%)
 Frame = -1

Query: 527 DPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVV-KPQAFAGKGHMLGSP 351
           DP   EFL  + +GEIP  L  Q     +  + +RH E   +V  K + F G G  LG+ 
Sbjct: 5   DPRTIEFLESVGKGEIPPSLVQQYPGKEIDFKVNRHHE--EYVAPKMKPFGGSGVRLGNV 62

Query: 350 TPPXXXXXXXXXXXXXXXXAN---------------LRAAQSAVTLDETQPVNTXQFRLA 216
            P                 A                L  A+  ++ +  +P    Q RL 
Sbjct: 63  VPTVLGQSSSSATTAGTSSATTDHNPDHTAENEAKQLEDAKKELSTNMNEPTTNIQIRLP 122

Query: 215 DGTRITGRFNHSHTVGAXREFVSRAEPAYQLRPFSXLTAFPSAEXGDDA 69
           +  R+ G FNHSHT+ A R F+  A P     PF  + A+P     D++
Sbjct: 123 NNQRLVGIFNHSHTLEAVRTFICTARPDMIYAPFQMMAAYPPKPFEDES 171


>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform a protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -1

Query: 563 FTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRH-EECPRHVVKP 390
           F  D+G      +P +A F  CI R E  ++       V + + +S   E+ P  V+KP
Sbjct: 194 FITDSGMQISLVNPSDAGFYHCIVRNEYTNQTRKSPKPVLIIVTESNSTEKAPTEVIKP 252


>AF106584-2|AAC78222.2|  316|Caenorhabditis elegans Hypothetical
           protein F54A5.3a protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 569 EGFTVDAGPLRHYSDPENAEFLSCIRRGEIPSELSGQ 459
           +GFTV A P+RH S      F+S  R   +  ++ G+
Sbjct: 173 DGFTVPAPPMRHRSSLHRQSFVSNCRAPTVTEDVVGK 209


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 530 SDPENAEFLSCIRRGEIPSELSGQGVSVRV 441
           SDPENAEFLS     +   + SG  ++V++
Sbjct: 509 SDPENAEFLSIKEARKTVEDASGCKIAVKI 538


>Z73972-2|CAA98258.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.2 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 503 SGTPHSPGRCSGAADPRPP 559
           SG P +PG+  GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208


>Z73972-1|CAA98257.1|  316|Caenorhabditis elegans Hypothetical
           protein F15H10.1 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 503 SGTPHSPGRCSGAADPRPP 559
           SG P +PG+  GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208


>X51623-1|CAA35955.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 503 SGTPHSPGRCSGAADPRPP 559
           SG P +PG+  GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208


>X51622-1|CAA35954.1|  316|Caenorhabditis elegans collagen protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 503 SGTPHSPGRCSGAADPRPP 559
           SG P +PG+  GAA P PP
Sbjct: 190 SGAPGAPGQSGGAALPGPP 208


>AF045645-6|AAC02608.1|  314|Caenorhabditis elegans Collagen protein
           101 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 503 SGTPHSPGRCSGAADPRPP 559
           SG P  PGR  GA+ P PP
Sbjct: 188 SGAPGQPGRSGGASLPGPP 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,058,012
Number of Sequences: 27780
Number of extensions: 166939
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)