Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L23
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   1.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   2.5  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    24   4.4  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    24   4.4  

>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 116 HRXYLTKGKKNKNYLLQ*KISLH*IVLILNLHYRFYL-QNTVAFRSVFQWIVIE 274
           HR Y TK + N N+  + + + + +  +   HY  Y  Q +  F  +F+   +E
Sbjct: 338 HRFYNTKSRFNSNFEPKERQAYNALSSVFEPHYTLYFNQQSQEFSILFENFALE 391


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 102 NMNICHNIVXSGTPLPXNIISQ*FFKLLY 16
           N N  H ++ +GTPL  N++    + LLY
Sbjct: 593 NFNAEHRLLLTGTPLQNNLVE--LWSLLY 619


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 287 HEMYFL*QSIEKLTEMLQYFVDKIYNVSLILIQFSVMK 174
           HE  F  + +EK+T  L    D +  + L L +FS++K
Sbjct: 78  HEQSF--EELEKITASLYQPDDNLQTLDLSLAEFSLIK 113


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 212 YRFYLQNTVAFRSVFQW 262
           YRFY      FRS+  W
Sbjct: 188 YRFYTSKRKCFRSILSW 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 961,640
Number of Sequences: 5004
Number of extensions: 13751
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)