Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L23
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical pr...    25   7.9  
M98552-6|AAA28208.1|  164|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    25   7.9  

>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 111 HFIEXILQKERKIKIIFYNK 170
           H IE  + K++ ++I+FYN+
Sbjct: 144 HLIEEYIPKDQNVQIVFYNR 163


>U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC13.2 protein.
          Length = 321

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 178 ITLNCINIKLTL*ILSTKYCSISVSFSMDCHRK 276
           ITLNC  +K    +   K CSI   FS+ C +K
Sbjct: 258 ITLNCGWVKYIDYMHGKKKCSICSLFSLCCGKK 290


>M98552-6|AAA28208.1|  164|Caenorhabditis elegans Hypothetical
           protein ZK370.6 protein.
          Length = 164

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 235 CSISVSFSMDCHRKYISCNL 294
           CSI   F ++  ++YISC +
Sbjct: 82  CSIYTDFKVEAQKEYISCKI 101


>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 94  IHIIFNTSSNXSYKRKEK*KLSFTIKNFITLNCINIKLTL*ILSTKYCSISV 249
           I++IF  SSN  +       L F + N +T + +NI + + I++ +YC I +
Sbjct: 26  IYLIFTESSN-KFGNYRFLLLYFALFN-LTYSVVNIVVPIDIITYRYCFIVI 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,250,782
Number of Sequences: 27780
Number of extensions: 74893
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)