Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L22
         (838 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   4.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   4.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.9  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   9.1  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    21   9.1  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 349 DPERSERHSPRRAVSSCSNRRSHPGRHSRRTIHYSLRGGSVSRSGTADHGS 501
           DP+   +  PRR  SS  + R+      R  ++ S+  GS   +  A  GS
Sbjct: 112 DPDAMGKWCPRREWSSPPDARAASDAARRGVLYSSVFLGSPGDASNASIGS 162


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 349 DPERSERHSPRRAVSSCSNRRSHPGRHSRRTIHYSLRGGSVSRSGTADHGS 501
           DP+   +  PRR  SS  + R+      R  ++ S+  GS   +  A  GS
Sbjct: 268 DPDAMGKWCPRREWSSPPDARAASDAARRGVLYSSVFLGSPGDASNASIGS 318


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 422 PGWDRLLEHEETARRGECRSD 360
           PG+D+LL  ++ A    C S+
Sbjct: 377 PGFDKLLREDQIALLKACSSE 397


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 343 SLDPERSERHSPRRAVSSCSNRRSHPGRHSRRTIHY 450
           S D E  ++  P    S CS         SR+ IHY
Sbjct: 57  SPDGEELKKALPDALHSGCSKCTEKQKEGSRKIIHY 92


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 400 NTKKPLVEENVALIVQDREKLLYITDLAIRQNELYVLVNK 281
           +TKK +V+  + +  +D    +  + L + QNEL +   K
Sbjct: 319 STKKLIVKIKIDIDKEDERNEVISSALKLSQNELEITACK 358


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,922
Number of Sequences: 336
Number of extensions: 4386
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23036718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)