Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_L22
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    27   2.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   3.3  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    27   4.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   5.8  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   5.8  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    26   5.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   7.6  

>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 263 KYKNWHFIDQHVKLILPYR*IGDVKQLLSILNDQSDILLDERFLR 397
           K+++W  + + V   +  +  GD+K  L   N+ +D ++ E+ LR
Sbjct: 64  KWRHWGCVTERVLRNVNKKFEGDIKNCLDGFNELNDPIVQEKILR 108


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 307 NELYVLVNKMPVFVFSMLNKEEYNFFVHSGQVYDLIK 197
           N++ V + +     FS LN++ Y+  +  GQ+YD IK
Sbjct: 600 NDVLVFMLEQTNSTFSSLNRKLYSDKIIVGQIYDHIK 636


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +2

Query: 248 FVQH*KYKNWHFIDQHVKLILPYR*IGDVKQLLSILNDQSDIL 376
           F+     ++W  I +H+ LI+P + +       S+ N + D++
Sbjct: 221 FIDFFSREDWPIISKHISLIVPTKKVNTTSAQTSLNNVEHDLI 263


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = -1

Query: 526  FDKEYKVLGSRGPLSQSGIHSHHAASSVLFYAN-----VARDGIVC-WNTKKPLVEENVA 365
            F K    +   G LS++      A SSV  Y+      + ++ IV  W+ K+P     + 
Sbjct: 1399 FGKHSSSISINGVLSKAWDELSSAGSSVNLYSEEIILLIQKNLIVTKWDVKRPAAAALLE 1458

Query: 364  LIVQDREKLLYITDLAIRQNELYVLVNK 281
             +   R        L  RQN++YVL+N+
Sbjct: 1459 FVNTSR--------LTYRQNDIYVLLNE 1478


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
 Frame = +1

Query: 124 DDVFLNRTLVKIK*IKSFNYHKQFL*LDRKLVRCARRNYILLCS-TLKIQKLAFY*PTRK 300
           D  FL     +++ + SF  +++   L R L + +  N  +L +  LK+       P   
Sbjct: 82  DQGFLGLVSFRMREVGSFRSNREVS-LTRPLKKSSTTNLSVLGNLVLKVAPSKIRAPAGN 140

Query: 301 AHSALSLNR*CKAASLDPERSERHSPR-RAVSSCSNRRSHPGRHSRRTIHYSLRGGSVSR 477
            HS+ + NR     +    R+ R +PR  A ++ SN+ +     +  +   S   G+ + 
Sbjct: 141 -HSSTTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199

Query: 478 SGTADHGSP 504
           +G +   SP
Sbjct: 200 TGASHRSSP 208


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 733 FWRIDHPSFVH 701
           FWRI+HPS+ H
Sbjct: 164 FWRINHPSYSH 174


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 532 ADFDKEYKVLGSRGPLSQSGIHSHHAASSVL 440
           ADF +EY +   R  L +  +HS H  S +L
Sbjct: 504 ADFIREYDMNNHRQQLIEESMHSIHTNSQLL 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,406,815
Number of Sequences: 5004
Number of extensions: 72053
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)